PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027353938.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 678aa MW: 75647.9 Da PI: 7.3828

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027353938.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.9	2.6e-06	119	138	5	24
--SGGGGTS--TTTTT-SS- CS zf-CCCH 5 lCrffartGtCkyGdrCkFa 24 +C+ff +G C+yG C+F+ XP_027353938.1 119 ECPFFKSGGSCPYGLACRFS 138 6******************5 PP

Sequence ? help Back to Top
Protein Sequence Length: 678 aa Download sequence
MDEEESGKGV AEQTPEQMVA RAIAPVKKDF LRPPPVRASS PNDDVSIPND NKTSVLAKEK 60 KSKRQLKRER RQEQKSARNL CPEIAKTGDV NSCPYKDKCR FSHDLEGFKA QKPGDLEGEC 120 PFFKSGGSCP YGLACRFSST HHDGVPSANL NGLKKGSEVN GLSKDVQKLL WKNKMRFLKA 180 DTQLKSLSLS VPHRSKRNDL ESKDGDDSGS NKCIQSDDSG SCVVTSESGP KLECPAEAIK 240 DDDIDGNFKS DVLCPQKRRK TTENCGPHET ENEGHTFIFD SCVSVTEQIV DIKSEQEAGT 300 DAIAPENDLS LKLHAREKKL IDFREKLYLA PLTTVGNLPF RRVCKVLGAD VTCGEMAMCT 360 NLLQGQASEW ALLRRHSSEN LFGVQICGAY PDTVARTVEL IEQECTIDFI DINMGCPIDI 420 VVNKGAGSAL LTKPMRMKSI VEVASGTADK PITVKVRTAY FEGKNRIDSL IEDIGSWGVS 480 AVTIHGRSRQ QRYSKLADWD YVYQCARKAP KMLQVVGNGD VFSFVDWNNH RTKCPELATC 540 MIARGALIKP WIFTEIKEQR HWDISSGERL NILKDFVNFG LEHWGSDTKG VETTRRFLLE 600 WLSYTCRYIP VGLLDVVPQR INWRPPSYHG RDELETLMAS DSAADWIRIS EMLLGKVPDG 660 FTFAPKHKSN AYDRAENG

Sequence ? help Back to Top

Protein Sequence Length: 678 aa Download sequence

MDEEESGKGV AEQTPEQMVA RAIAPVKKDF LRPPPVRASS PNDDVSIPND NKTSVLAKEK  60
KSKRQLKRER RQEQKSARNL CPEIAKTGDV NSCPYKDKCR FSHDLEGFKA QKPGDLEGEC  120
PFFKSGGSCP YGLACRFSST HHDGVPSANL NGLKKGSEVN GLSKDVQKLL WKNKMRFLKA  180
DTQLKSLSLS VPHRSKRNDL ESKDGDDSGS NKCIQSDDSG SCVVTSESGP KLECPAEAIK  240
DDDIDGNFKS DVLCPQKRRK TTENCGPHET ENEGHTFIFD SCVSVTEQIV DIKSEQEAGT  300
DAIAPENDLS LKLHAREKKL IDFREKLYLA PLTTVGNLPF RRVCKVLGAD VTCGEMAMCT  360
NLLQGQASEW ALLRRHSSEN LFGVQICGAY PDTVARTVEL IEQECTIDFI DINMGCPIDI  420
VVNKGAGSAL LTKPMRMKSI VEVASGTADK PITVKVRTAY FEGKNRIDSL IEDIGSWGVS  480
AVTIHGRSRQ QRYSKLADWD YVYQCARKAP KMLQVVGNGD VFSFVDWNNH RTKCPELATC  540
MIARGALIKP WIFTEIKEQR HWDISSGERL NILKDFVNFG LEHWGSDTKG VETTRRFLLE  600
WLSYTCRYIP VGLLDVVPQR INWRPPSYHG RDELETLMAS DSAADWIRIS EMLLGKVPDG  660
FTFAPKHKSN AYDRAENG