PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027353552.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C2H2

Protein Properties

Length: 527aa MW: 57804.3 Da PI: 8.3184

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027353552.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.2e-05	96	118	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_027353552.1 96 FVCEICSKGFQRDQNLQLHRRGH 118 89*******************88 PP
2	zf-C2H2	16.2	3e-05	172	194	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H++t+ XP_027353552.1 172 WKCDKCSKRYAVQSDWKAHQKTC 194 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence
MSNISGDEGS FSSGHNGEEV HQESQQPQLQ KHLHDSSSGP SSASNSNGSI NEQQTKKKRN 60 LPGTPGKYSN TLHFNFYPNA EVVALSPTTL MATNRFVCEI CSKGFQRDQN LQLHRRGHNL 120 PWKLRQRTST EVKKRVYVCP EPSCVHHNPA RALGDLTGIK KHYSRKHGEK KWKCDKCSKR 180 YAVQSDWKAH QKTCGTREYK CDCGTIFSRR DSFITHRAFC DALTEENNRV NQGLTSGMPP 240 NLQNQMPDLM STMPLNTCSN TASELRDYDP KNPLKSLPQE LVPIPFKGGG MFSTNAGPLF 300 GAPKSMSPSS STLQLSSNTS SSTFNYLQDN KNGALVSASA QMSATALLQK AAQMGYVSSM 360 AGPDQVSSAR PQFSAPILQH NPSFDHFPSQ PDLSNIAGVS GGGAFTNQLF HKGQEEISQL 420 FDTNTTGSTI NDVGMFNQMS MGSGHNQGLM NNVEQESCNG SSLIRGRDGT KGNPMQASRF 480 GGNDMTTVHD FLGIGGSTSR ARSEIMNHFH HHLPHEDSAM EEPIWDV

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence

MSNISGDEGS FSSGHNGEEV HQESQQPQLQ KHLHDSSSGP SSASNSNGSI NEQQTKKKRN  60
LPGTPGKYSN TLHFNFYPNA EVVALSPTTL MATNRFVCEI CSKGFQRDQN LQLHRRGHNL  120
PWKLRQRTST EVKKRVYVCP EPSCVHHNPA RALGDLTGIK KHYSRKHGEK KWKCDKCSKR  180
YAVQSDWKAH QKTCGTREYK CDCGTIFSRR DSFITHRAFC DALTEENNRV NQGLTSGMPP  240
NLQNQMPDLM STMPLNTCSN TASELRDYDP KNPLKSLPQE LVPIPFKGGG MFSTNAGPLF  300
GAPKSMSPSS STLQLSSNTS SSTFNYLQDN KNGALVSASA QMSATALLQK AAQMGYVSSM  360
AGPDQVSSAR PQFSAPILQH NPSFDHFPSQ PDLSNIAGVS GGGAFTNQLF HKGQEEISQL  420
FDTNTTGSTI NDVGMFNQMS MGSGHNQGLM NNVEQESCNG SSLIRGRDGT KGNPMQASRF  480
GGNDMTTVHD FLGIGGSTSR ARSEIMNHFH HHLPHEDSAM EEPIWDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-103	C2H2 family protein