PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027353326.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

Trihelix

Protein Properties

Length: 560aa MW: 63901.9 Da PI: 6.5552

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027353326.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.6	5e-16	96	159	2	70
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 Wt++evlaL+++r++me+++ + We+vs+k++e gf++++++Ckek+e+ ++++ +i + k+ XP_027353326.1 96 WTNDEVLALLRIRSSMENWFPQL-----TWEHVSRKLAELGFKKGAEKCKEKFEDESRYFDNIDDYGKN 159 ******************987.....9*****************************999987765 PP
2	trihelix	95.2	5.9e-30	421	508	1	85
trihelix 1 rWtkqevlaLiearr....emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW+++evlaLi++r + +++ ++g+ k+plWe++s+ m++ g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql XP_027353326.1 421 RWPRDEVLALINLRCtslsNNNNEEKEGNNKAPLWERISQGMSDLGYRRSAKRCKEKWENINKYFRKTKDVNKKR-SLDSRTCPYFHQL 508 8***********844445555555789*****************************************8.9999******9 PP

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence
MFDGAADQFH QFIAPRTTLP LHLSFPLHAS ATPNSFLPFD PYNPSHQFPF QTNLLHPLHP 60 HKDEEKEPNT MDMVPSINNV EIQRDQRQST QLTDSWTNDE VLALLRIRSS MENWFPQLTW 120 EHVSRKLAEL GFKKGAEKCK EKFEDESRYF DNIDDYGKNN YRFLSELEEL CHGDKNPDQG 180 GDDGVVSEKT HHLGGDNMGH ALEENSRDII GAQATKQCDG SDKVVEKSKE RKRKRKDRFE 240 MFKGFCESVV NKMMAQQEEI HNKLLDDMMK RDQEKFAREE AWKKQEMDKM NKELEIMAHE 300 QAIAGDRHTT IIEFLKKCAT TSPPSQNGEY KTNGSNRNCL RTTISSSSPQ NPNNPSTEEN 360 NLDSSDTLLQ VPSSSNSSPA PHNPTSSLNS HNNQLESNSV SINKATSTLM TTTEKDDVGR 420 RWPRDEVLAL INLRCTSLSN NNNEEKEGNN KAPLWERISQ GMSDLGYRRS AKRCKEKWEN 480 INKYFRKTKD VNKKRSLDSR TCPYFHQLSC LYGQGKLVLQ SERQGNHFNP TANTAQVPPD 540 QAQADESSQV GSGPLIQYAC

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence

MFDGAADQFH QFIAPRTTLP LHLSFPLHAS ATPNSFLPFD PYNPSHQFPF QTNLLHPLHP  60
HKDEEKEPNT MDMVPSINNV EIQRDQRQST QLTDSWTNDE VLALLRIRSS MENWFPQLTW  120
EHVSRKLAEL GFKKGAEKCK EKFEDESRYF DNIDDYGKNN YRFLSELEEL CHGDKNPDQG  180
GDDGVVSEKT HHLGGDNMGH ALEENSRDII GAQATKQCDG SDKVVEKSKE RKRKRKDRFE  240
MFKGFCESVV NKMMAQQEEI HNKLLDDMMK RDQEKFAREE AWKKQEMDKM NKELEIMAHE  300
QAIAGDRHTT IIEFLKKCAT TSPPSQNGEY KTNGSNRNCL RTTISSSSPQ NPNNPSTEEN  360
NLDSSDTLLQ VPSSSNSSPA PHNPTSSLNS HNNQLESNSV SINKATSTLM TTTEKDDVGR  420
RWPRDEVLAL INLRCTSLSN NNNEEKEGNN KAPLWERISQ GMSDLGYRRS AKRCKEKWEN  480
INKYFRKTKD VNKKRSLDSR TCPYFHQLSC LYGQGKLVLQ SERQGNHFNP TANTAQVPPD  540
QAQADESSQV GSGPLIQYAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	231	236	RKRKRK
2	231	237	RKRKRKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	1e-84	Trihelix family protein