PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027350859.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
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Family | C3H | ||||||||
Protein Properties | Length: 222aa MW: 23303.6 Da PI: 9.1663 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.9 | 9.5e-10 | 31 | 56 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck+Gd+C+FaHg+ XP_027350859.1 31 KTRLCNKFNTAEGCKFGDKCHFAHGE 56 8***********************96 PP | |||||||
2 | zf-CCCH | 37.9 | 3e-12 | 192 | 216 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC +fa+ G C +G+rC+FaHg XP_027350859.1 192 YKTKLCENFAK-GSCTFGERCHFAHG 216 9**********.*************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence |
MMNLTPAAPP ASRNVAAPPP VPNGSTPPAV KTRLCNKFNT AEGCKFGDKC HFAHGEWELG 60 KHIAPSFDDH RAMGPPAAGR IGGRMEPPPG PASSFGANAT AKISVEASLA GAIIGKGGVN 120 SKQICRQTGA KLSIREHESD PNLRNIELEG SFEQIKEASN MVKDLLLTLQ MSALPKTTAG 180 VPGAPAPHGS NYKTKLCENF AKGSCTFGER CHFAHGAAEL RK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 9e-67 | C3H family protein |