PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027350671.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 338aa MW: 36868.4 Da PI: 8.5204

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027350671.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.6	2.8e-10	3	22	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++++tGtCk+G++C+F+H++ XP_027350671.1 3 YYLKTGTCKFGATCRFHHPR 22 8*****************96 PP
2	zf-CCCH	37.8	3.1e-12	44	68	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ XP_027350671.1 44 EPECAYYLRTGQCKFGNTCKFHHPQ 68 799********************97 PP
3	zf-CCCH	38.3	2.2e-12	199	225	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_027350671.1 199 PGQPECQFYMKTGDCKFGAVCRFHHPR 225 5789*********************96 PP
4	zf-CCCH	37.3	4.5e-12	247	271	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC f++r+G+Ck+G++CkF H++ XP_027350671.1 247 EPLCVFYSRYGICKFGPSCKFDHPM 271 79*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MEYYLKTGTC KFGATCRFHH PRDKAGIAGR VDLNILGYPL RPNEPECAYY LRTGQCKFGN 60 TCKFHHPQPS NMVLSMRSSP VYPTIHSPTT PGQQSYAAGI TNWSSSSYIP SPRWQAPSSY 120 APLILPQGMV SVPGWSAYSG QMGSDSPQQT IGNGQTYGTS RQGEPSNAGS QGGYSQFRSG 180 SVPVGFYPLQ RENIFPERPG QPECQFYMKT GDCKFGAVCR FHHPRERMIP APDCVLSPMG 240 LPLRHGEPLC VFYSRYGICK FGPSCKFDHP MGIFTYNMSA SPSADAQGRR LLGSSSGTAA 300 LNLSSEGLVE SGSAKPRRLS LSETRQIASG DDNIDEEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-130	C3H family protein