PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027350669.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 426aa MW: 46845.8 Da PI: 8.2332

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027350669.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.6	1.5e-11	39	65	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p XP_027350669.1 39 PGEPDCSYYIRTGLCRFGATCRFNHPP 65 5789*********************97 PP
2	zf-CCCH	38	2.7e-12	86	110	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++C+F+H++ XP_027350669.1 86 QPECQYYLKTGTCKFGATCRFHHPR 110 799********************96 PP
3	zf-CCCH	37.4	4.2e-12	132	156	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ XP_027350669.1 132 EPECAYYLRTGQCKFGNTCKFHHPQ 156 799********************97 PP
4	zf-CCCH	37.9	2.9e-12	287	313	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ XP_027350669.1 287 PGQPECQFYMKTGDCKFGAVCRFHHPR 313 5789*********************96 PP
5	zf-CCCH	36.9	6e-12	335	359	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC f++r+G+Ck+G++CkF H++ XP_027350669.1 335 EPLCVFYSRYGICKFGPSCKFDHPM 359 79*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MEFDAAIPVS REHLPQDAMW QMNLRSSETM ESGPYPEHPG EPDCSYYIRT GLCRFGATCR 60 FNHPPNRKLA IAAARMKGEF PERIGQPECQ YYLKTGTCKF GATCRFHHPR DKAGIAGRVD 120 LNILGYPLRP NEPECAYYLR TGQCKFGNTC KFHHPQPSNM VLSMRSSPVY PTIHSPTTPG 180 QQSYAAGITN WSSSSYIPSP RWQAPSSYAP LILPQGMVSV PGWSAYSGQM GSDSPQQTIG 240 NGQTYGTSRQ GEPSNAGSQG GYSQFRSGSV PVGFYPLQRE NIFPERPGQP ECQFYMKTGD 300 CKFGAVCRFH HPRERMIPAP DCVLSPMGLP LRHGEPLCVF YSRYGICKFG PSCKFDHPMG 360 IFTYNMSASP SADAQGRRLL GSSSGTAALN LSSEGLVESG SAKPRRLSLS ETRQIASGDD 420 NIDEEG

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MEFDAAIPVS REHLPQDAMW QMNLRSSETM ESGPYPEHPG EPDCSYYIRT GLCRFGATCR  60
FNHPPNRKLA IAAARMKGEF PERIGQPECQ YYLKTGTCKF GATCRFHHPR DKAGIAGRVD  120
LNILGYPLRP NEPECAYYLR TGQCKFGNTC KFHHPQPSNM VLSMRSSPVY PTIHSPTTPG  180
QQSYAAGITN WSSSSYIPSP RWQAPSSYAP LILPQGMVSV PGWSAYSGQM GSDSPQQTIG  240
NGQTYGTSRQ GEPSNAGSQG GYSQFRSGSV PVGFYPLQRE NIFPERPGQP ECQFYMKTGD  300
CKFGAVCRFH HPRERMIPAP DCVLSPMGLP LRHGEPLCVF YSRYGICKFG PSCKFDHPMG  360
IFTYNMSASP SADAQGRRLL GSSSGTAALN LSSEGLVESG SAKPRRLSLS ETRQIASGDD  420
NIDEEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	0.0	C3H family protein