PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027346881.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 867aa MW: 94619.7 Da PI: 5.7884

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027346881.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.4	1.6e-10	72	99	1	27
--S---SGGGGTS.--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaHgp 27 +kt+lC++f+r G C++Gd C++aHg+ XP_027346881.1 72 WKTSLCSYFRRHGgSCSHGDACRYAHGE 99 8*************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 867 aa Download sequence
MAEPLTNPNT ELASSKTLNP INVHDSTMEP HQTLPLDAQI HPQNDYVVPT KKRQRDDADA 60 DDDADRSVHP LWKTSLCSYF RRHGGSCSHG DACRYAHGEE ELRPRPDNTW DQTSERAKKA 120 LKSETPEKRD VSEVVMMTEA VVDGDADGED DGCGSSHALS KCLMHLPMKW SSEVLRNFLN 180 KEGIAFKHAK KKKGMAVGFL TFEDEEQMKN STKALEGKSI SNKTLRVGDV IPRSFEKKSN 240 SNTRNVRDVV TPLAHMAYAD QLEQKKNSLV KILKKLTKNA RKACPTGVPL PEWVLKSREI 300 GGLPCKLEGI VASPIVNGYR NKCEFSVGYS LEGKVTVGFM LGNFREGVTA VEEAVDCPNV 360 STIAGKYANI FQEFLQHSDL PVWNRFKNTG FWRQLTVREG RTNGSVVDAG TFDGIAEVML 420 IVQVSTANFD VAQVATEFKR LAQAFVAGAT SHCPTLPLTA LIVQDHQGIS NVAPADAPMH 480 PLPLPKTVGD PEMGENNNAT DVRIHDYISN LQFSISPTAF FQVNTLAAEK LYSLAGDWAC 540 LGPDTLLFDI CCGTGTIGLT LAHRVGMVIG IEMNASAVTD AHRNAEINGI KNVKFICAKA 600 EDVMGSLLRE YLDVTKEQVG HPNISGNGND IPVDTACPEP ENGEMASCCS DNNDAEVRNV 660 VQKASTSEQV DGISKQAEDA MGAVLGENLN VPEEQVDDPN ISKSGKDIPE DSANAEPENG 720 EMASRCSENN SAEAGSVVQQ DSASENGNTS SEQFKNVVAI VDPPRAGLHP TVIKALRTHP 780 RLRRLVYISC NPESLVANAI ELCTPSPIKV EKGNKDNRGW RNRSSAGLAR HRAKSMPISE 840 AFQPIKAIPV DLFPHTQHCE LVMLLER

Sequence ? help Back to Top

Protein Sequence Length: 867 aa Download sequence

MAEPLTNPNT ELASSKTLNP INVHDSTMEP HQTLPLDAQI HPQNDYVVPT KKRQRDDADA  60
DDDADRSVHP LWKTSLCSYF RRHGGSCSHG DACRYAHGEE ELRPRPDNTW DQTSERAKKA  120
LKSETPEKRD VSEVVMMTEA VVDGDADGED DGCGSSHALS KCLMHLPMKW SSEVLRNFLN  180
KEGIAFKHAK KKKGMAVGFL TFEDEEQMKN STKALEGKSI SNKTLRVGDV IPRSFEKKSN  240
SNTRNVRDVV TPLAHMAYAD QLEQKKNSLV KILKKLTKNA RKACPTGVPL PEWVLKSREI  300
GGLPCKLEGI VASPIVNGYR NKCEFSVGYS LEGKVTVGFM LGNFREGVTA VEEAVDCPNV  360
STIAGKYANI FQEFLQHSDL PVWNRFKNTG FWRQLTVREG RTNGSVVDAG TFDGIAEVML  420
IVQVSTANFD VAQVATEFKR LAQAFVAGAT SHCPTLPLTA LIVQDHQGIS NVAPADAPMH  480
PLPLPKTVGD PEMGENNNAT DVRIHDYISN LQFSISPTAF FQVNTLAAEK LYSLAGDWAC  540
LGPDTLLFDI CCGTGTIGLT LAHRVGMVIG IEMNASAVTD AHRNAEINGI KNVKFICAKA  600
EDVMGSLLRE YLDVTKEQVG HPNISGNGND IPVDTACPEP ENGEMASCCS DNNDAEVRNV  660
VQKASTSEQV DGISKQAEDA MGAVLGENLN VPEEQVDDPN ISKSGKDIPE DSANAEPENG  720
EMASRCSENN SAEAGSVVQQ DSASENGNTS SEQFKNVVAI VDPPRAGLHP TVIKALRTHP  780
RLRRLVYISC NPESLVANAI ELCTPSPIKV EKGNKDNRGW RNRSSAGLAR HRAKSMPISE  840
AFQPIKAIPV DLFPHTQHCE LVMLLER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28450.2	0.0	C3H family protein