PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027345778.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
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Family | ARF | ||||||||
Protein Properties | Length: 796aa MW: 88173.4 Da PI: 6.7493 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.9 | 4.7e-24 | 164 | 265 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F + ++ XP_027345778.1 164 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--RGEN 255 99****************************963.3445679************************************************..4499 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_027345778.1 256 GELRLGIRRA 265 999****996 PP | |||||||
2 | Auxin_resp | 117.6 | 1e-38 | 290 | 372 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 +a+a+stks+F+v+Y+Pras+++Fvv+++k++k++k+++++G+Rfkm+fe+++s+err+ Gt +g+sdldp+rWp+SkWr+L XP_027345778.1 290 VANAISTKSMFHVFYSPRASHADFVVPYKKYVKSIKNPMTIGTRFKMRFEMDESQERRCsGGTLIGTSDLDPYRWPKSKWRCL 372 689********************************************************889********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 796 aa Download sequence |
MEIDLNHEVT EVEKNAFCDR ECEKGACVRC WSSSTCSSSS SSSALVSSSY LELWHACAGP 60 LTSLPKKGNV VVYFPQGHLE QVASFSPFTP LEIPTYDLQP QIFCRVVNVQ LLANKENDEV 120 YTQVTLLPQS ELSGMNSEGK EVEEMGAEEE SDERSPTKST PHMFCKTLTA SDTSTHGGFS 180 VPRRAAEDCF PPLDYKQQRP SQELVAKDLH GVEWKFRHIY RGQPRRHLLT TGWSIFVSQK 240 NLVSGDAVLF LRGENGELRL GIRRAVRPRN GLPESIIGSQ NCYPNFLSSV ANAISTKSMF 300 HVFYSPRASH ADFVVPYKKY VKSIKNPMTI GTRFKMRFEM DESQERRCSG GTLIGTSDLD 360 PYRWPKSKWR CLMVRWDEDI ETNHQDRVSP WEIDLSAPLP PLSIQSSPRL KKLRTGLQAA 420 SQSHLITAAG GSGLVGFEES VRSPKVLQGQ ENAGFVSLYY GCDTVTNRPG FEMSSPSHPN 480 LASAGVRKVP SSELSSVHPF SYAGFMETNR FPRVLQGQEM CPLKSLTGKV DLNLGAWGKP 540 NLSCTTFNLH QATKPNFQSP YFPYGDIHQT GQASLFCSKS TSFQRENVPY NSPSTKAGII 600 INEVGRSDLP NEHKLQDNIS AAAASLGAAS MAIPNDNNVQ GKVNACKLFG FPLSGETTNQ 660 NSQNSAKRSC TKVHKQGSLV GRAIDLSRLS GYNDLLSELE RLFGMEGLLK DPDKGWRILY 720 TDSENDIMVV GDDPWHEFCD VVSKIHIYTQ EEVEKMTIGM ISDDTNSCLE QAPVIMEASK 780 SSSVGQPDYS PTAVRV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | ARF family protein |