PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027345230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
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Family | SRS | ||||||||
Protein Properties | Length: 415aa MW: 43831.9 Da PI: 8.1451 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 215.2 | 1.6e-66 | 198 | 357 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96 +sg+++CqdCGnqakkdC+h+RCRtCCksrgfdC th+kstWvpaa+rrerq +++ a++ + + +++ sk++r +++++++s+t++s++++ XP_027345230.1 198 NSGGSTCQDCGNQAKKDCSHRRCRTCCKSRGFDCPTHLKSTWVPAARRRERQLMTSVAAAGS--TGSTSGSKKPRLV-ASQTTTTSHTSTSNTTP 289 57889**********************************************88877765555..4477888999976.888999999******** PP DUF702 97 kkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++++t s lP +v+++avf+cvrv++vddge+e+aYq++v+igGhvfkG+LydqG+e+ XP_027345230.1 290 PRSFDTGSshqdasfkesLPCQVRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQGAED 357 *****99999*******************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence |
MSRQQQQKQE QKTHSNKVVA TTRRFPSDSG AFADWSATPS AAVSGRADDL SLGFNASSAA 60 VHGGAASGMW PGASRSFNYN LAPHHDIFVV APSSFHHHHH NDAVLSDPNN NGSTSVGVNV 120 IPLLTATPCL ASPNIILDNE GVMGNNSRNR IQLWQDHESQ HQQQPSNYLK KHGHGVIEHN 180 SNSGDGNNLI LQSGSVTNSG GSTCQDCGNQ AKKDCSHRRC RTCCKSRGFD CPTHLKSTWV 240 PAARRRERQL MTSVAAAGST GSTSGSKKPR LVASQTTTTS HTSTSNTTPP RSFDTGSSHQ 300 DASFKESLPC QVRAPAVFKC VRVTAVDDGE DEYAYQAVVK IGGHVFKGFL YDQGAEDRDG 360 YPNISELHLG GGGGGSSGNV GSGGRNGPMM DPSEVYAASS GGLLGGSSNY GNPIN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.4 | 3e-74 | SRS family protein |