PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027342448.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

HD-ZIP

Protein Properties

Length: 777aa MW: 86540.3 Da PI: 6.1915

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027342448.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.4	3.9e-21	124	179	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t++q++e+e+lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k XP_027342448.1 124 RKKYHRHTAQQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 179 7999************************************************9877 PP
2	START	228.6	1.8e-71	295	516	4	206
HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS START 4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 ++a++el+k+a+ +ep+W +s e++n+de++++f+ +++ +s+ea+r++gvv+ +l++lv+++ld + qW+e+++ ka++++v XP_027342448.1 295 NQAMEELIKMATMGEPLWLRSFetgrEILNYDEYMKEFAVENAnnerpkRSIEASRETGVVFVDLPRLVQSFLDAN-QWKEMFPclisKAAMVDV 388 689****************99***********9888899***************************.************** PP ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS START 85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172 i++g ga+qlm+aelq+l+p+vp R+++fvRy++ql+a++w+ivd+S+d +++ ++s+v+++++pSg++ie+ksngh+kv+wveh ++ XP_027342448.1 389 ICNGegsnrnGAVQLMFAELQMLTPMVPtREVYFVRYCKQLSAEQWAIVDISIDKVEDNI-DASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLEC 482 ******************************************************98.9***************************** PP -SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 173 kgrlphwllrslvksglaegaktwvatlqrqcek 206 +++ +h+++r +v+sgla+ga++w atlq qce+ XP_027342448.1 483 QKSAVHSMYRTIVNSGLAFGARHWIATLQLQCER 516 ******************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 777 aa Download sequence
MTEPFLLLKK HTLSSTQQML PMGADMSNNP SPTSHPKDFF ASPALSLSLA GIFRHAGVAS 60 EAEAATCNME VEEGEEGSGG GERLEEISSE NSGPARSRSE DDFEGEGEQD DDDGDGDKTK 120 KKKRKKYHRH TAQQIREMEA LFKESPHPDE KQRQQLSKQL GLAPRQVKFW FQNRRTQIKA 180 IQERHENSLL KTEIEKLKEK NKTLRETINK ACCPNCGVAT TPRDGTMPTE EQQLRIENAK 240 LRAEVEKLRA AIGKYAPGTA SPSCSSGHDQ ENRSSLDFYT GIFGLDKSRI MDIVNQAMEE 300 LIKMATMGEP LWLRSFETGR EILNYDEYMK EFAVENANNE RPKRSIEASR ETGVVFVDLP 360 RLVQSFLDAN QWKEMFPCLI SKAAMVDVIC NGEGSNRNGA VQLMFAELQM LTPMVPTREV 420 YFVRYCKQLS AEQWAIVDIS IDKVEDNIDA SLVKCRKRPS GCIIEDKSNG HCKVIWVEHL 480 ECQKSAVHSM YRTIVNSGLA FGARHWIATL QLQCERLVFF MATNVPMKDS TGVATLAGRK 540 SILKLAQRMT WSFCHAIGAS SFHTWTKVTS KTGEDIRISS RKNLNDPGEP LGLILCAVSS 600 VWLPVSPNVL FDFLRDEARR TEWDIMSSGG AVQCIANLAK GQDRGNAVTI QTIKSKENSL 660 WILQDSCTNS YESMVVYASV DITGIQSVMT GCDSSNLAIL PSGFSIIPDG LESRPLVITS 720 RQEEKNTEGG SLFTMAFQIL TNASPTAKLT MESVDSVNTL VSCTLRNIRT SLQCEDG

Sequence ? help Back to Top

Protein Sequence Length: 777 aa Download sequence

MTEPFLLLKK HTLSSTQQML PMGADMSNNP SPTSHPKDFF ASPALSLSLA GIFRHAGVAS  60
EAEAATCNME VEEGEEGSGG GERLEEISSE NSGPARSRSE DDFEGEGEQD DDDGDGDKTK  120
KKKRKKYHRH TAQQIREMEA LFKESPHPDE KQRQQLSKQL GLAPRQVKFW FQNRRTQIKA  180
IQERHENSLL KTEIEKLKEK NKTLRETINK ACCPNCGVAT TPRDGTMPTE EQQLRIENAK  240
LRAEVEKLRA AIGKYAPGTA SPSCSSGHDQ ENRSSLDFYT GIFGLDKSRI MDIVNQAMEE  300
LIKMATMGEP LWLRSFETGR EILNYDEYMK EFAVENANNE RPKRSIEASR ETGVVFVDLP  360
RLVQSFLDAN QWKEMFPCLI SKAAMVDVIC NGEGSNRNGA VQLMFAELQM LTPMVPTREV  420
YFVRYCKQLS AEQWAIVDIS IDKVEDNIDA SLVKCRKRPS GCIIEDKSNG HCKVIWVEHL  480
ECQKSAVHSM YRTIVNSGLA FGARHWIATL QLQCERLVFF MATNVPMKDS TGVATLAGRK  540
SILKLAQRMT WSFCHAIGAS SFHTWTKVTS KTGEDIRISS RKNLNDPGEP LGLILCAVSS  600
VWLPVSPNVL FDFLRDEARR TEWDIMSSGG AVQCIANLAK GQDRGNAVTI QTIKSKENSL  660
WILQDSCTNS YESMVVYASV DITGIQSVMT GCDSSNLAIL PSGFSIIPDG LESRPLVITS  720
RQEEKNTEGG SLFTMAFQIL TNASPTAKLT MESVDSVNTL VSCTLRNIRT SLQCEDG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	125	KKKKRK
2	120	126	KKKKRKK
3	122	126	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79840.1	0.0	HD-ZIP family protein