PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027342319.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

HD-ZIP

Protein Properties

Length: 382aa MW: 41713 Da PI: 6.7148

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027342319.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.8	1.6e-17	200	254	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_027342319.1 200 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 254 778899***********************************************98 PP
2	HD-ZIP_I/II	128	4.1e-41	200	290	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk XP_027342319.1 200 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELR-ALK 290 69*************************************************************************************9.555 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MELGLSLGDT SRPLLGFVEK PREASNQLGL SFNTTLSIGP IITRQKDQEE EEEAKPKKNT 60 NTHIAEDPCD LSSKSNTPVL HQLDLLPQLS FPWQAPSENG SLSSELGGSS RGLDVNVQPA 120 AAAEDEAEEV AALSSSPNSA ASSFQMDLCI YNNRGGSFSG SGGNYYKRDS EGEAYDQRAS 180 SRASDEDENN GGGVGGGNTR KKLRLSKEQS AFLEESFKEH NTLNPKQKLA LAKQLNLRPR 240 QVEVWFQNRR ARTKLKQTEV DCEYLKRCCE TLTEENRRLH KELQELRALK TSNPFYMQLP 300 ATTLTMCPSC ERVATNSTSN SSSATLSATI NANNTGANAT ATATAKTSND STSKAIGFPF 360 GKPRFHPFVH TNQPHQHQSP AS

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MELGLSLGDT SRPLLGFVEK PREASNQLGL SFNTTLSIGP IITRQKDQEE EEEAKPKKNT  60
NTHIAEDPCD LSSKSNTPVL HQLDLLPQLS FPWQAPSENG SLSSELGGSS RGLDVNVQPA  120
AAAEDEAEEV AALSSSPNSA ASSFQMDLCI YNNRGGSFSG SGGNYYKRDS EGEAYDQRAS  180
SRASDEDENN GGGVGGGNTR KKLRLSKEQS AFLEESFKEH NTLNPKQKLA LAKQLNLRPR  240
QVEVWFQNRR ARTKLKQTEV DCEYLKRCCE TLTEENRRLH KELQELRALK TSNPFYMQLP  300
ATTLTMCPSC ERVATNSTSN SSSATLSATI NANNTGANAT ATATAKTSND STSKAIGFPF  360
GKPRFHPFVH TNQPHQHQSP AS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	199	205	TRKKLRL
2	249	257	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	2e-61	HD-ZIP family protein