PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027341394.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 676aa MW: 75709.4 Da PI: 8.1449

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027341394.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.1	1.3e-07	9	29	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +Cr+fa+ G C++G++C+F H XP_027341394.1 9 PCRDFAA-GKCRRGSQCHFLHH 29 8****.***********6 PP
2	zf-CCCH	18.5	3.5e-06	68	89	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ++a+ G C+ G++Ck+ H XP_027341394.1 68 ETCINYAK-GRCRMGASCKYVHH 89 78****.***********6 PP
3	zf-CCCH	19.7	1.5e-06	133	153	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f+++G C+ G rC+F+H+ XP_027341394.1 133 PCK-FFAFGNCRNGKRCRFSHD 153 799.8888*************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence
MRAGGLAQPC RDFAAGKCRR GSQCHFLHHD DQNYDDNWES RHRKDGTPRY STLHESGDYS 60 RTSGRSKETC INYAKGRCRM GASCKYVHHD NSDQFSKFSV DEATREREID RRRTENTLEQ 120 GGRHGPNHNG DIPCKFFAFG NCRNGKRCRF SHDRQASRSP NRILNDDRSR SNQGEDQALD 180 RPKLSDKVSP NGRLRDDRWG LDGSMADRDE VWDGSKQNDL VVVPDLVKLV KDNKTGIMGT 240 PEPGFMAWPI IDGWDHSLDK NRVHGGSPFS SDKKEEANCW TAKNDSANIH SSQSVAADIW 300 PGNEKMSPDW NYGVGSSSHT KEEHGKSKQQ VAPGQGFNQN VNTLHSSSCH AVGQSQVAVS 360 IVPPRLGTVE VMQNQEVSTE KKYMVEPNIM DANLSQVGSR NPPTQNMVSK EQLTHLTSLS 420 ASLAHILGTG RQLPQLYVTS ISQDAKDTPF LSKTEGFGKP ASITFIKPDP AVELQKQCDP 480 MCDSMEPNKA NVNGVPTTLS PSKKVPSLLP KVGQHFDDSK TAFSEEQLVK SEHSIQLQKV 540 ENIEVNKENN EVVAEEKQSS RIENKITEEN GPLENMDQNS GPDDEAKKIK DVKGIRAFKF 600 SLVEFVKELL KPTWKEGQIT KEDYKAIVKK VTDKVTGTVQ RVHIPQTQEK IDRYLSFSKP 660 KLNKLIQAYV EKVQKA

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence

MRAGGLAQPC RDFAAGKCRR GSQCHFLHHD DQNYDDNWES RHRKDGTPRY STLHESGDYS  60
RTSGRSKETC INYAKGRCRM GASCKYVHHD NSDQFSKFSV DEATREREID RRRTENTLEQ  120
GGRHGPNHNG DIPCKFFAFG NCRNGKRCRF SHDRQASRSP NRILNDDRSR SNQGEDQALD  180
RPKLSDKVSP NGRLRDDRWG LDGSMADRDE VWDGSKQNDL VVVPDLVKLV KDNKTGIMGT  240
PEPGFMAWPI IDGWDHSLDK NRVHGGSPFS SDKKEEANCW TAKNDSANIH SSQSVAADIW  300
PGNEKMSPDW NYGVGSSSHT KEEHGKSKQQ VAPGQGFNQN VNTLHSSSCH AVGQSQVAVS  360
IVPPRLGTVE VMQNQEVSTE KKYMVEPNIM DANLSQVGSR NPPTQNMVSK EQLTHLTSLS  420
ASLAHILGTG RQLPQLYVTS ISQDAKDTPF LSKTEGFGKP ASITFIKPDP AVELQKQCDP  480
MCDSMEPNKA NVNGVPTTLS PSKKVPSLLP KVGQHFDDSK TAFSEEQLVK SEHSIQLQKV  540
ENIEVNKENN EVVAEEKQSS RIENKITEEN GPLENMDQNS GPDDEAKKIK DVKGIRAFKF  600
SLVEFVKELL KPTWKEGQIT KEDYKAIVKK VTDKVTGTVQ RVHIPQTQEK IDRYLSFSKP  660
KLNKLIQAYV EKVQKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	6e-13	C3H family protein