PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027341392.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 786aa MW: 88280 Da PI: 8.9815

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027341392.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.9	1.5e-07	142	162	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +Cr+fa+ G C++G++C+F H XP_027341392.1 142 PCRDFAA-GKCRRGSQCHFLHH 162 8****.***********6 PP
2	zf-CCCH	18.3	4.2e-06	201	222	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ++a+ G C+ G++Ck+ H XP_027341392.1 201 ETCINYAK-GRCRMGASCKYVHH 222 78****.***********6 PP
3	zf-CCCH	19.4	1.8e-06	266	286	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f+++G C+ G rC+F+H+ XP_027341392.1 266 PCK-FFAFGNCRNGKRCRFSHD 286 799.8888*************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 786 aa Download sequence
MSGNGRKHSS KWDSRDQHEF APDSVASSNS SKWSYLERND KLKSRMGFSF KEPFPEGRGS 60 NKDDITSKDY RALDATSAQD TDRSYSMEMS PGLEDWKSKK YSQSPRNGCS HRSRSRSPSR 120 GFRWDSGVND RCRMRAGGLA QPCRDFAAGK CRRGSQCHFL HHDDQNYDDN WESRHRKDGT 180 PRYSTLHESG DYSRTSGRSK ETCINYAKGR CRMGASCKYV HHDNSDQFSK FSVDEATRER 240 EIDRRRTENT LEQGGRHGPN HNGDIPCKFF AFGNCRNGKR CRFSHDRQAS RSPNRILNDD 300 RSRSNQGEDQ ALDRPKLSDK VSPNGRLRDD RWGLDGSMAD RDEVWDGSKQ NDLVVVPDLV 360 KLVKDNKTGI MGTPEPGFMA WPIIDGWDHS LDKNRVHGGS PFSSDKKEEA NCWTAKNDSA 420 NIHSSQSVAA DIWPGNEKMS PDWNYGVGSS SHTKEEHGKS KQQVAPGQGF NQNVNTLHSS 480 SCHAVGQSQV AVSIVPPRLG TVEVMQNQEV STEKKYMVEP NIMDANLSQV GSRNPPTQNM 540 VSKEQLTHLT SLSASLAHIL GTGRQLPQLY VTSISQDAKD TPFLSKTEGF GKPASITFIK 600 PDPAVELQKQ CDPMCDSMEP NKANVNGVPT TLSPSKKVPS LLPKVGQHFD DSKTVNKENN 660 EVVAEEKQSS RIENKITEEN GPLENMDQNS GPDDEAKKIK DVKGIRAFKF SLVEFVKELL 720 KPTWKEGQIT KEDYKAIVKK VTDKVTGTVQ RVHIPQTQEK IDRYLSFSKP KLNKLIQAYV 780 EKVQKA

Sequence ? help Back to Top

Protein Sequence Length: 786 aa Download sequence

MSGNGRKHSS KWDSRDQHEF APDSVASSNS SKWSYLERND KLKSRMGFSF KEPFPEGRGS  60
NKDDITSKDY RALDATSAQD TDRSYSMEMS PGLEDWKSKK YSQSPRNGCS HRSRSRSPSR  120
GFRWDSGVND RCRMRAGGLA QPCRDFAAGK CRRGSQCHFL HHDDQNYDDN WESRHRKDGT  180
PRYSTLHESG DYSRTSGRSK ETCINYAKGR CRMGASCKYV HHDNSDQFSK FSVDEATRER  240
EIDRRRTENT LEQGGRHGPN HNGDIPCKFF AFGNCRNGKR CRFSHDRQAS RSPNRILNDD  300
RSRSNQGEDQ ALDRPKLSDK VSPNGRLRDD RWGLDGSMAD RDEVWDGSKQ NDLVVVPDLV  360
KLVKDNKTGI MGTPEPGFMA WPIIDGWDHS LDKNRVHGGS PFSSDKKEEA NCWTAKNDSA  420
NIHSSQSVAA DIWPGNEKMS PDWNYGVGSS SHTKEEHGKS KQQVAPGQGF NQNVNTLHSS  480
SCHAVGQSQV AVSIVPPRLG TVEVMQNQEV STEKKYMVEP NIMDANLSQV GSRNPPTQNM  540
VSKEQLTHLT SLSASLAHIL GTGRQLPQLY VTSISQDAKD TPFLSKTEGF GKPASITFIK  600
PDPAVELQKQ CDPMCDSMEP NKANVNGVPT TLSPSKKVPS LLPKVGQHFD DSKTVNKENN  660
EVVAEEKQSS RIENKITEEN GPLENMDQNS GPDDEAKKIK DVKGIRAFKF SLVEFVKELL  720
KPTWKEGQIT KEDYKAIVKK VTDKVTGTVQ RVHIPQTQEK IDRYLSFSKP KLNKLIQAYV  780
EKVQKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	6e-13	C3H family protein