PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027340829.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 722aa MW: 77996.1 Da PI: 5.3887

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027340829.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.8	7.8e-08	301	321	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ GtC++Gd C +aHg XP_027340829.1 301 PCPDFRK-GTCRRGDMCEYAHG 321 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 722 aa Download sequence
MCGGPEKSKS LSTESSSAVE GSTNVKDMKN LTVHTEDSFC CLLELASNND FEDFKLALER 60 DTSLLNEVGL WYVRQSGSKQ IVLEHRTPLM VAAMYGSIDV LKLILSCPEV DVNFSCGSDK 120 STALHCAASG GSVNAVCVVK LLLSAGADIN CVDANGNRPV DVIIVPPKLD GFKAILEDLL 180 SDSASDGSVD DCSFPVTDNS SPDSSSHLSS SENGLPSSPV APKFTDTAVN STSEKKEYPV 240 DPSLPDIKNS IYATDEFRMF SFKVRPCSRA YSHDWTECPF VHPGENARRR DPRKFHYSCV 300 PCPDFRKGTC RRGDMCEYAH GVFECWLHPA QYRTRLCKDG TSCNRRVCFF AHTAEELRPL 360 YVSTGSAVPS PRSSASTPNV MDMAAAMSLF PGSPSSISSM SPSPFAQPMS PSASSISHSS 420 AWPQPNVPAL HLPGSNIQTS RLRSSLSARD MPPEDLDVLQ DFDGQQQLLN DLGCFSQPRP 480 GAISVSRSGW SKTLTPSNLD DLFSAEISSS PRYADPAVAS VFSPTHKSAV LNQFQQLQSS 540 LSPINTNVSS PRNVEHPLLQ ASFGVSSPGR MSPRSMEPIS PMSSRLAAYA QREKQQQQLR 600 SLSSRDLGAN NPASVVGSPV NSWSKWGSPN GNGKVDWSVN GNELGRLQRS SSFELGNNGE 660 EPDLSWVQSL VKESPPEIKD RLAGSGPIAS ADGLNSNPQV ESIDHSVLGA WLEQMQLDQL 720 LV

Sequence ? help Back to Top

Protein Sequence Length: 722 aa Download sequence

MCGGPEKSKS LSTESSSAVE GSTNVKDMKN LTVHTEDSFC CLLELASNND FEDFKLALER  60
DTSLLNEVGL WYVRQSGSKQ IVLEHRTPLM VAAMYGSIDV LKLILSCPEV DVNFSCGSDK  120
STALHCAASG GSVNAVCVVK LLLSAGADIN CVDANGNRPV DVIIVPPKLD GFKAILEDLL  180
SDSASDGSVD DCSFPVTDNS SPDSSSHLSS SENGLPSSPV APKFTDTAVN STSEKKEYPV  240
DPSLPDIKNS IYATDEFRMF SFKVRPCSRA YSHDWTECPF VHPGENARRR DPRKFHYSCV  300
PCPDFRKGTC RRGDMCEYAH GVFECWLHPA QYRTRLCKDG TSCNRRVCFF AHTAEELRPL  360
YVSTGSAVPS PRSSASTPNV MDMAAAMSLF PGSPSSISSM SPSPFAQPMS PSASSISHSS  420
AWPQPNVPAL HLPGSNIQTS RLRSSLSARD MPPEDLDVLQ DFDGQQQLLN DLGCFSQPRP  480
GAISVSRSGW SKTLTPSNLD DLFSAEISSS PRYADPAVAS VFSPTHKSAV LNQFQQLQSS  540
LSPINTNVSS PRNVEHPLLQ ASFGVSSPGR MSPRSMEPIS PMSSRLAAYA QREKQQQQLR  600
SLSSRDLGAN NPASVVGSPV NSWSKWGSPN GNGKVDWSVN GNELGRLQRS SSFELGNNGE  660
EPDLSWVQSL VKESPPEIKD RLAGSGPIAS ADGLNSNPQV ESIDHSVLGA WLEQMQLDQL  720
LV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein