PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027340451.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C2H2

Protein Properties

Length: 515aa MW: 57557.4 Da PI: 8.8769

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027340451.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.3e-05	71	93	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H XP_027340451.1 71 FICEVCNKGFQRDQNLQLHRRGH 93 89*******************88 PP
2	zf-C2H2	11.2	0.0012	148	170	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + XP_027340451.1 148 WKCDKCSKKYAVQSDWKAHNKIC 170 58*****************8876 PP
3	zf-C2H2	11.2	0.0012	178	196	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsrk+++++H + XP_027340451.1 178 DCGTIFSRKDSFVTHRAFC 196 9**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence
MMSEEAISVP SNSNLRGSMV QIHDPNSNSN PNPNPNSNPS VKRKRSLPGT PDPDAEVIAL 60 SPKSLMATNR FICEVCNKGF QRDQNLQLHR RGHNLPWKLR QRSKQEVVRK KVYVCPEKSC 120 VHHDPCRALG DLTGIKKHFS RKHGEKKWKC DKCSKKYAVQ SDWKAHNKIC GTRQYKCDCG 180 TIFSRKDSFV THRAFCDAMA EQSARMTSLP GVLSNFGNDI LINAQAPRMM PQGLQLQGFQ 240 QEFGGPGPEP FMGNFTDADH DQKLRLPLWL DQANPQLHHP LNVPSNSSVF SSGTGTTMPE 300 ANMFGTSPQA QWLNYRHPEA SFTSANVSMP HVLKLEQEEN KRDLSHSVSS LYPHGGPSHM 360 SATPLFQKAA QIESSRINGN SPFDTSNNAF GLLGSNISST SINNRNNNVV EIQKIFKHAS 420 HGDSFNHMVN SQASTNVGGG FSLPSTKGLD HTVMPRNNEE WQWGQAPIMD EQVHSSSNNQ 480 DHLTKDFMGV GDDSLSRTLQ QNQFMNLQSQ FREHY

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence

MMSEEAISVP SNSNLRGSMV QIHDPNSNSN PNPNPNSNPS VKRKRSLPGT PDPDAEVIAL  60
SPKSLMATNR FICEVCNKGF QRDQNLQLHR RGHNLPWKLR QRSKQEVVRK KVYVCPEKSC  120
VHHDPCRALG DLTGIKKHFS RKHGEKKWKC DKCSKKYAVQ SDWKAHNKIC GTRQYKCDCG  180
TIFSRKDSFV THRAFCDAMA EQSARMTSLP GVLSNFGNDI LINAQAPRMM PQGLQLQGFQ  240
QEFGGPGPEP FMGNFTDADH DQKLRLPLWL DQANPQLHHP LNVPSNSSVF SSGTGTTMPE  300
ANMFGTSPQA QWLNYRHPEA SFTSANVSMP HVLKLEQEEN KRDLSHSVSS LYPHGGPSHM  360
SATPLFQKAA QIESSRINGN SPFDTSNNAF GLLGSNISST SINNRNNNVV EIQKIFKHAS  420
HGDSFNHMVN SQASTNVGGG FSLPSTKGLD HTVMPRNNEE WQWGQAPIMD EQVHSSSNNQ  480
DHLTKDFMGV GDDSLSRTLQ QNQFMNLQSQ FREHY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	111	KLRQRSKQEVVRKK
2	100	113	KLRQRSKQEVVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	7e-99	C2H2 family protein