PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027340273.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 372aa MW: 41831.2 Da PI: 7.0919

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027340273.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.4	5.8e-09	49	69	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C f+++ G C yG+rC++ H+ XP_027340273.1 49 ICTFYQK-GVCAYGSRCRYDHV 69 7****.***********7 PP
2	zf-CCCH	18.3	4.1e-06	154	175	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ G C++G++C+ +Hg XP_027340273.1 154 SICS-FAAAGNCPRGEKCPHIHG 175 6788.**************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MQLEDYSIFF NFLSSESSRV LCKFFAHGAC LKGEHCEFSH DWKDPPNNIC TFYQKGVCAY 60 GSRCRYDHVK APRAQSSTPS SSVIEHQPLA SDSAAFGNSR TTSNGFVTAA DFSLSGSPYL 120 LPHKPAWNQE SEYHEFLGEE DVGQSIITSP SEHSICSFAA AGNCPRGEKC PHIHGDLCPT 180 CGKHCLHPFR SEEREEHMKS CENKQKHLDA LKRSQEIECS VCLERVLSKP TAAERKFGLL 240 SECDHPFCIS CIRNWRSSNP TLGMDVNSTL RACPICRKLS YFVIPSVIWY STTEEKLEII 300 DNYKAKLKSI DCKHFDFGDG NCPFGTSCFY KHAYRDGRLE QVVLRHLGAA DGNTVIAKDI 360 RLSDFLANMH LR

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MQLEDYSIFF NFLSSESSRV LCKFFAHGAC LKGEHCEFSH DWKDPPNNIC TFYQKGVCAY  60
GSRCRYDHVK APRAQSSTPS SSVIEHQPLA SDSAAFGNSR TTSNGFVTAA DFSLSGSPYL  120
LPHKPAWNQE SEYHEFLGEE DVGQSIITSP SEHSICSFAA AGNCPRGEKC PHIHGDLCPT  180
CGKHCLHPFR SEEREEHMKS CENKQKHLDA LKRSQEIECS VCLERVLSKP TAAERKFGLL  240
SECDHPFCIS CIRNWRSSNP TLGMDVNSTL RACPICRKLS YFVIPSVIWY STTEEKLEII  300
DNYKAKLKSI DCKHFDFGDG NCPFGTSCFY KHAYRDGRLE QVVLRHLGAA DGNTVIAKDI  360
RLSDFLANMH LR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-163	C3H family protein