PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027340271.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 452aa MW: 50990 Da PI: 5.1555

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027340271.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.4	1.8e-06	4	24	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 + C+f+ar G C G++C F+H XP_027340271.1 4 RVCKFYAR-GACLKGEQCDFSH 24 68****.*********** PP
2	zf-CCCH	28.2	3.3e-09	29	50	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C ++++ G+C yG+rC++ H+ XP_027340271.1 29 DICTYYQK-GFCAYGSRCRYKHV 50 68****.***********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MSNRVCKFYA RGACLKGEQC DFSHERKDDI CTYYQKGFCA YGSRCRYKHV KASQALSVAS 60 SSSNGRQSPA SDSVLSQTAK GTSNWVPKAA RLPSSSSDKR ARCSQRKHLA SLGNGDVGES 120 SASSAIPSDH LFCTFSAANC PLGDECSRMH GNQCLYCRKF CLHPTDRKQK ENHLRTCEKK 180 EKYLQAVKDS QEIECNVCLE RVLSKPKPSD CKFGLLPECD HSFCLSCIRN WRNSAPTSGM 240 DINNTANTVR TCPVCRKLSY FVIPSGIWYS TKEEKQEIID NYKANCKLID CKHFDFRNGN 300 CPFGASCFYK HTVKPGSYTW IHNRPPPQRR QNNFDMYDML DMLSEVDLSS SEYYSIMRDS 360 EFFDDMDPFD MMAISDRLTG GSGPCLGPFD SDDEEMGIFQ MAALSEELVA GVDDFGPEDF 420 DDEEFNPMEA AILSMMMHSN MDEEEEEDSD ED

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MSNRVCKFYA RGACLKGEQC DFSHERKDDI CTYYQKGFCA YGSRCRYKHV KASQALSVAS  60
SSSNGRQSPA SDSVLSQTAK GTSNWVPKAA RLPSSSSDKR ARCSQRKHLA SLGNGDVGES  120
SASSAIPSDH LFCTFSAANC PLGDECSRMH GNQCLYCRKF CLHPTDRKQK ENHLRTCEKK  180
EKYLQAVKDS QEIECNVCLE RVLSKPKPSD CKFGLLPECD HSFCLSCIRN WRNSAPTSGM  240
DINNTANTVR TCPVCRKLSY FVIPSGIWYS TKEEKQEIID NYKANCKLID CKHFDFRNGN  300
CPFGASCFYK HTVKPGSYTW IHNRPPPQRR QNNFDMYDML DMLSEVDLSS SEYYSIMRDS  360
EFFDDMDPFD MMAISDRLTG GSGPCLGPFD SDDEEMGIFQ MAALSEELVA GVDDFGPEDF  420
DDEEFNPMEA AILSMMMHSN MDEEEEEDSD ED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.1	1e-104	C3H family protein