PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027339760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
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Family | ARF | ||||||||
Protein Properties | Length: 900aa MW: 99823.2 Da PI: 6.7429 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.4 | 1.6e-24 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F +++ XP_027339760.1 127 FCKILTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNE 217 99*****************************8544444..48************************************************..889 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l+++++r+ XP_027339760.1 218 KNQLLLGIRRA 228 9999****997 PP | |||||||
2 | Auxin_resp | 119.1 | 3.6e-39 | 253 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld+vrWpnS+Wrs+k XP_027339760.1 253 AAHAAATNSRFTIFYNPRASPSEFVISLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVK 336 79*********************************9789******************************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 900 aa Download sequence |
MKLSSAGFSP PPQEGEKRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNRE 60 VDGHIPNYPS LPPQLICQLH NVTMHADTET DEVYAQMTLQ PLSPQEQKEA YLPAELGTPS 120 KQPTNYFCKI LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHGNEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQPVMPSSVL 240 SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVISL AKYVKAVYHT RVSVGMRFRM 300 LFETEESSVR RYMGTITGIS DLDSVRWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT 360 TFPMYPSPFP FRLKRPWPPG MPSFHGLKDD DFGINSPLLW LRDPDRGLQS LPFQGVGVSP 420 WMQPRHPSMV NLQTDMYQAM AAAALQDMRT LDPSKQHATS LLQFQQPQNF PNRTSALMQT 480 QMLQQSQHQQ AFPNSQENPH PSQSQAQTHT HFQQHLQHQH SFNNQNQHHL LQQQQQPQPQ 540 QVIDHQQISS AVSTMSQFVS APQSQSPPMQ AISSLGHQQS FSDSNGNPAT TAIVSPLHSI 600 LSSFPQDEPS HLLNLPRTSS WVPVQPSGAW PSKRIALDPL LSSGASQCVL PQVEQLGQPQ 660 STISQNAITL PPFPGRECAI EGSNDPQNHL LFGVNIEPSS LLVHNGMSSL KGVSSNSDSP 720 TIPFQSSNYL NTTGTDSSLN PGMTPNIGEL GFLPTPDNGG QGNPPTKTFV KVYKSGSFGR 780 SLDITKFTSY HELRSELARM FGLEGELEDP VRSGWQLVFV DQENDVLLLG DGPWPEFVNS 840 VWCIKILSPQ EVQQMGHNGL ELLNSVPIQR LSDGICDDYT GREDPRNLST GVTTVGSLNY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | ARF family protein |