PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027338408.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

SBP

Protein Properties

Length: 381aa MW: 41747.8 Da PI: 8.1061

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027338408.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.6	1.3e-41	98	174	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe hsk+p+v++ gl+qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ XP_027338408.1 98 CLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTIGGLKQRFCQQCSRFHSLEEFDERKRSCRKRLDGHNRRRRKPQP 174 **************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MDWNLKAPSW ELGDVDKATI PNIGTMEEPS RFGVYRMKGE FSVDLKLGQV GNSGTESVHV 60 KSKDAAGVGV GISKVASSPS GSSKRARAIN NATMTVSCLV DGCNSDLSNC RDYHRRHKVC 120 ELHSKTPEVT IGGLKQRFCQ QCSRFHSLEE FDERKRSCRK RLDGHNRRRR KPQPEPLTRP 180 GSFLSNYQGT QLLPFSSAHV YPSTAVVNPT WSGGLVTSSA DARLHNHSHN QQVHFLGSSL 240 SSYKDQGKQL AFLQCDNSQT PPFEAASVCH TLVRSNPLSE TCGVRSKMLC DSLTTSVHDS 300 PCALSLLSSS QTHTPLNQMV VQPSSMSLMQ SLGLSLQDSS LESVERVLVP NGSDHCSSMY 360 NLGSDGSQCN EAPQLFPFQW E

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MDWNLKAPSW ELGDVDKATI PNIGTMEEPS RFGVYRMKGE FSVDLKLGQV GNSGTESVHV  60
KSKDAAGVGV GISKVASSPS GSSKRARAIN NATMTVSCLV DGCNSDLSNC RDYHRRHKVC  120
ELHSKTPEVT IGGLKQRFCQ QCSRFHSLEE FDERKRSCRK RLDGHNRRRR KPQPEPLTRP  180
GSFLSNYQGT QLLPFSSAHV YPSTAVVNPT WSGGLVTSSA DARLHNHSHN QQVHFLGSSL  240
SSYKDQGKQL AFLQCDNSQT PPFEAASVCH TLVRSNPLSE TCGVRSKMLC DSLTTSVHDS  300
PCALSLLSSS QTHTPLNQMV VQPSSMSLMQ SLGLSLQDSS LESVERVLVP NGSDHCSSMY  360
NLGSDGSQCN EAPQLFPFQW E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	171	RKRSCRKRLDGHNRRRRK
2	154	172	RKRSCRKRLDGHNRRRRKP
3	155	173	RKRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	7e-76	SBP family protein