PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027335976.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 242aa MW: 27817.8 Da PI: 4.7861 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.7 | 9.5e-19 | 37 | 88 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq++ Le++Fe ++ + +++ +LA+ lgL+ rqV +WFqN+Ra++k XP_027335976.1 37 RRFSDEQIKSLESMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWK 88 58*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 117.7 | 6.6e-38 | 36 | 126 | 3 | 93 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 rr+s+eq+k+LE++Fe+e++Lep++K +lar+Lglqprqva+WFqn+RAR+k+kqlE++y+ L+++y++l+++ e+L+ke+++L +l++ XP_027335976.1 36 TRRFSDEQIKSLESMFETESRLEPRKKLQLARDLGLQPRQVAIWFQNKRARWKSKQLEREYSILQANYNNLASRFEALKKEKQTLLIQLQK 126 79***********************************************************************************999986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence |
MLDSMEYTYS AEAETYTSSS STPSTAMRKK KNNNNTRRFS DEQIKSLESM FETESRLEPR 60 KKLQLARDLG LQPRQVAIWF QNKRARWKSK QLEREYSILQ ANYNNLASRF EALKKEKQTL 120 LIQLQKLNDL IQKPLEQSQR CAQVKGANSM DSESENGGTM KCEAEVKPSP SMERSEHAHG 180 VLSDDDTSIK VEYFGLEDEP GLLNFAEHGD GSLTSPEDWG TFESDDLLGQ SSSDYQWWDF 240 WS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46680.1 | 1e-71 | HD-ZIP family protein |