PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027335363.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C2H2

Protein Properties

Length: 541aa MW: 59531.8 Da PI: 8.8888

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027335363.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.3e-05	117	139	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_027335363.1 117 FICEICNKGFQRDQNLQLHRRGH 139 89*******************88 PP
2	zf-C2H2	12	0.00064	193	215	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ XP_027335363.1 193 WKCDKCSKKYAVQSDWKAHSKTC 215 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence
MKMKGLMFQQ QVVEENMSNL TSASGEASAS SGNRTEIGTS YPQQYLVQPQ TQTPPAKKKR 60 NLPGNPGFVS HFSVQSLNFI CFVCLIFFNF CYFFKNSDPD AEVIALSPKS LLATNRFICE 120 ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTS KEVRKKVYVC PEPSCVHHDP SRALGDLTGI 180 KKHFCRKHGE KKWKCDKCSK KYAVQSDWKA HSKTCGTREY RCDCGTLFSR RDSFITHRAF 240 CDALAEESAR AITGTTSQPS SSHHHHMNLQ TQFNPQDLHG FPLKIEQQQQ SFNLRPEIVP 300 PWLGPPTVDL SSSSSIFSTN QEFSHQENPN PSLGPTLATY RAVPNPSPHM SATALLQKAA 360 QMGATMSRTG SSPAMIRPHM QTHVSSSADS GNISSGNFGL NLSSREDTST STTATTTTSA 420 TTVFGHGLSP LGNKAAVSSA PTLLHDVINS FSNPSAFEGT PFEDPFGGIL NSKKDDNLHL 480 HDTFSKTNTT THLATAAGGN EGLTRDFLGL RPLSHTDILS IAGIGNCIND QQNQSQKQWQ 540 G

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence

MKMKGLMFQQ QVVEENMSNL TSASGEASAS SGNRTEIGTS YPQQYLVQPQ TQTPPAKKKR  60
NLPGNPGFVS HFSVQSLNFI CFVCLIFFNF CYFFKNSDPD AEVIALSPKS LLATNRFICE  120
ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTS KEVRKKVYVC PEPSCVHHDP SRALGDLTGI  180
KKHFCRKHGE KKWKCDKCSK KYAVQSDWKA HSKTCGTREY RCDCGTLFSR RDSFITHRAF  240
CDALAEESAR AITGTTSQPS SSHHHHMNLQ TQFNPQDLHG FPLKIEQQQQ SFNLRPEIVP  300
PWLGPPTVDL SSSSSIFSTN QEFSHQENPN PSLGPTLATY RAVPNPSPHM SATALLQKAA  360
QMGATMSRTG SSPAMIRPHM QTHVSSSADS GNISSGNFGL NLSSREDTST STTATTTTSA  420
TTVFGHGLSP LGNKAAVSSA PTLLHDVINS FSNPSAFEGT PFEDPFGGIL NSKKDDNLHL  480
HDTFSKTNTT THLATAAGGN EGLTRDFLGL RPLSHTDILS IAGIGNCIND QQNQSQKQWQ  540
G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	144	156	KLKQRTSKEVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-108	C2H2 family protein