PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027334998.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 485aa MW: 52478 Da PI: 4.7424

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027334998.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.5	7.1e-11	146	168	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C f+++tGtCk+G +CkF+H+ XP_027334998.1 146 EDCAFYMKTGTCKFGFNCKFNHP 168 89********************8 PP
2	zf-CCCH	27.6	5e-09	194	214	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++++r+G Ck+G +Ck++H XP_027334998.1 194 ECKYYQRSGGCKFGKSCKYNH 214 7******************** PP
3	zf-CCCH	40.9	3.3e-13	237	261	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG Ck+G++CkF+H+ XP_027334998.1 237 GEKECPYYMRTGSCKFGANCKFNHP 261 6789********************9 PP
4	zf-CCCH	27.3	6.2e-09	372	398	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ ++CkF+H++ XP_027334998.1 372 PGEPECSYFLKTGGCKFKSNCKFHHPK 398 5799*********************96 PP
5	zf-CCCH	35.6	1.5e-11	419	443	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++++r+G+Ck+G+ CkF H+ XP_027334998.1 419 DQSVCSHYSRYGICKFGPACKFDHP 443 5789********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence
MEPSESDSAA LSNSNGEDLQ LGPEGAPSSA PDALPPPSDL NHAAEEDSLR EELQNKLDLN 60 VGEESTEKVS DFNDGGGVCD EETGKGEEGC DGDSRGWEIN SWNEEVGVDV DADVDVDIDG 120 DGDGVEKKEE KSGGGTHQYP LRPEAEDCAF YMKTGTCKFG FNCKFNHPIR RKNQAVKDKA 180 GEREESAERL GLTECKYYQR SGGCKFGKSC KYNHTRGKCS TAPVLELNFL GLPIRQGEKE 240 CPYYMRTGSC KFGANCKFNH PDPTAVGGCD PPSGYGNGGS ISLQGVSQQS VPSWSSPRTL 300 NEASPFVPVM LPPTQGISTQ SSDWNGYQAP VYLSERSMHP PSTFVMNNPA IETNVYIPHQ 360 KQMPVEEFPE RPGEPECSYF LKTGGCKFKS NCKFHHPKNR IARLPPCNLS DKGLPLRPDQ 420 SVCSHYSRYG ICKFGPACKF DHPISSLPLM VPGLGQQSYS NSASVEVAGI GESAGASDAA 480 IQQSV

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence

MEPSESDSAA LSNSNGEDLQ LGPEGAPSSA PDALPPPSDL NHAAEEDSLR EELQNKLDLN  60
VGEESTEKVS DFNDGGGVCD EETGKGEEGC DGDSRGWEIN SWNEEVGVDV DADVDVDIDG  120
DGDGVEKKEE KSGGGTHQYP LRPEAEDCAF YMKTGTCKFG FNCKFNHPIR RKNQAVKDKA  180
GEREESAERL GLTECKYYQR SGGCKFGKSC KYNHTRGKCS TAPVLELNFL GLPIRQGEKE  240
CPYYMRTGSC KFGANCKFNH PDPTAVGGCD PPSGYGNGGS ISLQGVSQQS VPSWSSPRTL  300
NEASPFVPVM LPPTQGISTQ SSDWNGYQAP VYLSERSMHP PSTFVMNNPA IETNVYIPHQ  360
KQMPVEEFPE RPGEPECSYF LKTGGCKFKS NCKFHHPKNR IARLPPCNLS DKGLPLRPDQ  420
SVCSHYSRYG ICKFGPACKF DHPISSLPLM VPGLGQQSYS NSASVEVAGI GESAGASDAA  480
IQQSV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-136	C3H family protein