PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027333786.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 233aa MW: 27076.9 Da PI: 9.6954 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95 | 3.3e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+iifs++gkl+eyss XP_027333786.1 9 KRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLFEYSS 59 79***********************************************96 PP | |||||||
2 | K-box | 104.8 | 1.1e-34 | 76 | 174 | 2 | 100 |
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 ++++ + ++a +e++ e+akLk+++e Lqr+qR+++Ge+L+sLs+keLq+LeqqL++++k+iRs+Kn++++e+i+elqkk k+lqe+n+ L k XP_027333786.1 76 AERQLVGDDQAPNENWVIEHAKLKARMEVLQRNQRNFKGEELDSLSIKELQNLEQQLDSAIKRIRSRKNQVMYESISELQKKDKALQEHNNLLAK 170 5566677778889********************************************************************************** PP K-box 97 klee 100 k++e XP_027333786.1 171 KIKE 174 *987 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 233 aa Download sequence |
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KANEISVLCD AEVALIIFST KGKLFEYSSD 60 PCMERVIERY ERYSYAERQL VGDDQAPNEN WVIEHAKLKA RMEVLQRNQR NFKGEELDSL 120 SIKELQNLEQ QLDSAIKRIR SRKNQVMYES ISELQKKDKA LQEHNNLLAK KIKEKEKALA 180 QQEQRGVHNN ADMNSVLVTQ PLEYLNIGCN EETPTPTRAN TILPPWLPRP TTE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60910.1 | 1e-102 | MIKC_MADS family protein |