PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027331530.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 614aa MW: 73693.3 Da PI: 7.1194

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027331530.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.7	1.7e-07	193	212	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G rC++ H XP_027331530.1 193 CPFHLKTGACRFGLRCSRVH 212 ******************99 PP
2	zf-CCCH	30	9.1e-10	322	349	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++++G tC++G C+F+H+ XP_027331530.1 322 WKVAICGEYMKSGfkTCSRGTACNFIHC 349 899************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 614 aa Download sequence
MEEKWGEGTR MSINRKEKRK AMKKMKRKQL RKEAAERERR EEEERLNDPG EQRRLQLLEQ 60 EEAERMERDR IQFEERERAW MEMIDQQQLQ QQQQSHSNER EDQIDDDEYE YVEEEGPPQI 120 IWQGNEIILK KKQIRVRVRD RDRDKDKDKD EYEDEYRPTS NPFPPESPAQ AQMLENVAQQ 180 VPNFGTEQDK AHCPFHLKTG ACRFGLRCSR VHFYPDKSCT LLMKNMYNGP GLSWEQDEGL 240 EYTDEEVERC FEEFYEDVHT EFLKFGEIVN FKVCKNGSFH LRGNVYVQYK LLDSALLAYN 300 SVNGRYFAGK QVSCQFVNLT RWKVAICGEY MKSGFKTCSR GTACNFIHCF PNPGGDYEWA 360 DSDKPPPRYW VKKMVALFGY SDDYETLKEQ GNLSLPKNTS KTDSDRYHSR RLRSREMDQL 420 NCGRSGRRKQ EDKKTRRTPD EEWNANFDFD GERLEKEENR EKHHELTRNS SFNRNKDDNG 480 RSYEEDSDVD WDTRENEKQH GREGKNSRKW KRDSRDWIYE VESDGERDRK RHHIGKRKSS 540 RHQSGNDSDS DNNLLDREME RQHGYCRKSL RHRRSGLQDD YKYLENENEK VDGGWSQRQS 600 DKREHRHKKK RSRG

Sequence ? help Back to Top

Protein Sequence Length: 614 aa Download sequence

MEEKWGEGTR MSINRKEKRK AMKKMKRKQL RKEAAERERR EEEERLNDPG EQRRLQLLEQ  60
EEAERMERDR IQFEERERAW MEMIDQQQLQ QQQQSHSNER EDQIDDDEYE YVEEEGPPQI  120
IWQGNEIILK KKQIRVRVRD RDRDKDKDKD EYEDEYRPTS NPFPPESPAQ AQMLENVAQQ  180
VPNFGTEQDK AHCPFHLKTG ACRFGLRCSR VHFYPDKSCT LLMKNMYNGP GLSWEQDEGL  240
EYTDEEVERC FEEFYEDVHT EFLKFGEIVN FKVCKNGSFH LRGNVYVQYK LLDSALLAYN  300
SVNGRYFAGK QVSCQFVNLT RWKVAICGEY MKSGFKTCSR GTACNFIHCF PNPGGDYEWA  360
DSDKPPPRYW VKKMVALFGY SDDYETLKEQ GNLSLPKNTS KTDSDRYHSR RLRSREMDQL  420
NCGRSGRRKQ EDKKTRRTPD EEWNANFDFD GERLEKEENR EKHHELTRNS SFNRNKDDNG  480
RSYEEDSDVD WDTRENEKQH GREGKNSRKW KRDSRDWIYE VESDGERDRK RHHIGKRKSS  540
RHQSGNDSDS DNNLLDREME RQHGYCRKSL RHRRSGLQDD YKYLENENEK VDGGWSQRQS  600
DKREHRHKKK RSRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	1e-143	C3H family protein