PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027331521.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C2H2

Protein Properties

Length: 363aa MW: 42758.7 Da PI: 8.6451

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027331521.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00053	141	164	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++ +Lk+H + H XP_027331521.1 141 YTCGVCGRKCKTHLDLKKHFKQlH 164 9******************98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MRVTESMNSL FLQNANPMHF TFHTQTISPK PKPIQQRYYP RLRCCIEIDM VKNNQGIYAP 60 KNDKVVVLWD LDNKPPRGPP YDAAVSLKTL AQSFGHLVDF SAYANRHAFV HLPQWVLNQR 120 RERRNLDIFE RKGIVTPSES YTCGVCGRKC KTHLDLKKHF KQLHQRERQK KLNRLKSLKG 180 KKRHRFKERF LRGNHKYDEA ARTLIVPKVG YGLAAELRRA GVFVKTVQDK PQAADWALKR 240 QMVHSMSRGI DWLFLVSDDS DFSEMLRRAR ENNLGTVVVG DWDRALGRHA DLWVPWIEVE 300 NGEISGGDLV LKKREEKRRM DELEQDGLVF YEDEDLDQEF LLVYSEDDED YEEEEEEEKF 360 YIY

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MRVTESMNSL FLQNANPMHF TFHTQTISPK PKPIQQRYYP RLRCCIEIDM VKNNQGIYAP  60
KNDKVVVLWD LDNKPPRGPP YDAAVSLKTL AQSFGHLVDF SAYANRHAFV HLPQWVLNQR  120
RERRNLDIFE RKGIVTPSES YTCGVCGRKC KTHLDLKKHF KQLHQRERQK KLNRLKSLKG  180
KKRHRFKERF LRGNHKYDEA ARTLIVPKVG YGLAAELRRA GVFVKTVQDK PQAADWALKR  240
QMVHSMSRGI DWLFLVSDDS DFSEMLRRAR ENNLGTVVVG DWDRALGRHA DLWVPWIEVE  300
NGEISGGDLV LKKREEKRRM DELEQDGLVF YEDEDLDQEF LLVYSEDDED YEEEEEEEKF  360
YIY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	161	RRERRNLDIFERKGIVTPSESYTCGVCGRKCKTHLDLKKHFK
2	312	320	KKREEKRRM
3	313	321	KKREEKRRM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-152	C2H2 family protein