PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027331419.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

M-type_MADS

Protein Properties

Length: 370aa MW: 41891.8 Da PI: 7.6012

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027331419.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	70.2	1.9e-22	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + e+ snr+vt+skR+ gilKKA+ELS+LCd+++ +++fs+tgk XP_027331419.1 10 KLESISNRHVTYSKRKSGILKKAKELSILCDIDIVLLMFSPTGK 53 57899**************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MGRVKLKIKK LESISNRHVT YSKRKSGILK KAKELSILCD IDIVLLMFSP TGKATLLQGE 60 RSNIEEIIAK FSQHSPQERA KRKMESLEAL KKTFKKLDHD VKLQDFLGSS QTVEELTYQL 120 RILQAQLTEV HQRLSYWNNL EKINSIEHLK QMEDSLRESI NRVCLQKENL GKHQLISLEC 180 ANQLQEGMTL PLMMAGLQES QPLSWLLNSD NRQLMLPSEP KYLPFSDNTN RDVECSTDIS 240 LPGYSGYIGS NKLEVGSSPQ VTSLGQGGAA LNELNGTAYL NVQHCDQFAY PPPPDIEEVK 300 HQPTTMNSKP NTVEYQVNSN FDLPRSLFEN GHQFWNSASG SCGIAMYNEN GYHRVSGLFM 360 FHKIILYSPG

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MGRVKLKIKK LESISNRHVT YSKRKSGILK KAKELSILCD IDIVLLMFSP TGKATLLQGE  60
RSNIEEIIAK FSQHSPQERA KRKMESLEAL KKTFKKLDHD VKLQDFLGSS QTVEELTYQL  120
RILQAQLTEV HQRLSYWNNL EKINSIEHLK QMEDSLRESI NRVCLQKENL GKHQLISLEC  180
ANQLQEGMTL PLMMAGLQES QPLSWLLNSD NRQLMLPSEP KYLPFSDNTN RDVECSTDIS  240
LPGYSGYIGS NKLEVGSSPQ VTSLGQGGAA LNELNGTAYL NVQHCDQFAY PPPPDIEEVK  300
HQPTTMNSKP NTVEYQVNSN FDLPRSLFEN GHQFWNSASG SCGIAMYNEN GYHRVSGLFM  360
FHKIILYSPG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	2e-95	M-type_MADS family protein