PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027331308.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 484aa MW: 50874.8 Da PI: 8.1444

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027331308.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35	2.4e-11	50	74	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG+C +G+rC+F+H++ XP_027331308.1 50 EADCTYYLRTGFCGFGSRCRFNHPR 74 689********************96 PP
2	zf-CCCH	34.4	3.7e-11	95	119	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rt Ck+G++Ck++H++ XP_027331308.1 95 QPVCQYYMRTRSCKFGASCKYHHPR 119 689********************96 PP
3	zf-CCCH	36.2	1e-11	140	164	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++ +tG+Ck+G++CkF+H+ XP_027331308.1 140 GEKECSYYVKTGQCKFGATCKFHHP 164 7899********************9 PP
4	zf-CCCH	32.1	2e-10	355	376	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ++a+ G Ck+G+ CkF H+ XP_027331308.1 355 PCTHYAQHGVCKFGSACKFDHP 376 8********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence
MEQYGQFSEG SRSDPSPEWT GTGGETGLEE PMWQLGLGAA EESYPQRPNE ADCTYYLRTG 60 FCGFGSRCRF NHPRDRAAVV GAERTVGEYP ERVGQPVCQY YMRTRSCKFG ASCKYHHPRQ 120 AGGSATVVSL NYYGYPLRPG EKECSYYVKT GQCKFGATCK FHHPLPAGVQ IPAPSPVAPV 180 SPLPVPVPSP LYSTVQPPPG PSSQQIGVLV ARPPLMPGSL VQSPYGPVVL SPAMVPISGW 240 GPYQAPATGP VLPSGTPSNV ASAHLYGMTQ LPSSAAAYPG PYQPSGSSVG PPSSSQKEQA 300 FPDGPNHPEY QYYGKTGEVK FGPSYRYHPP PDANAPKVNV ILSPAGLPLR PGALPCTHYA 360 QHGVCKFGSA CKFDHPVGSQ GYSPSASSLA EMPVVPYPVG SSTGTLAQSS SSSELRPQPT 420 PGSSKESTPS RMSSSRSMLT ESIGLTLSTG GPVSQSTDYQ SAQSSSPSAA ATTTTSSIIS 480 HTSS

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence

MEQYGQFSEG SRSDPSPEWT GTGGETGLEE PMWQLGLGAA EESYPQRPNE ADCTYYLRTG  60
FCGFGSRCRF NHPRDRAAVV GAERTVGEYP ERVGQPVCQY YMRTRSCKFG ASCKYHHPRQ  120
AGGSATVVSL NYYGYPLRPG EKECSYYVKT GQCKFGATCK FHHPLPAGVQ IPAPSPVAPV  180
SPLPVPVPSP LYSTVQPPPG PSSQQIGVLV ARPPLMPGSL VQSPYGPVVL SPAMVPISGW  240
GPYQAPATGP VLPSGTPSNV ASAHLYGMTQ LPSSAAAYPG PYQPSGSSVG PPSSSQKEQA  300
FPDGPNHPEY QYYGKTGEVK FGPSYRYHPP PDANAPKVNV ILSPAGLPLR PGALPCTHYA  360
QHGVCKFGSA CKFDHPVGSQ GYSPSASSLA EMPVVPYPVG SSTGTLAQSS SSSELRPQPT  420
PGSSKESTPS RMSSSRSMLT ESIGLTLSTG GPVSQSTDYQ SAQSSSPSAA ATTTTSSIIS  480
HTSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06410.1	1e-116	C3H family protein