PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027183917.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family FAR1
Protein Properties Length: 226aa    MW: 26385.1 Da    PI: 8.2671
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027183917.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR178.61.2e-2426113189
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                     kfYn+YA ++GFsvrk++ +k  ++g +t+r++ C keg +++ + + +  +rtra+t+tgC ak+++ + + + k++v++l+leHnHel
  XP_027183917.1  26 KFYNKYAFKMGFSVRKDYLNKD-KDGVTTSRRYSCCKEGVKRKYEGD-VMPKRTRASTKTGCGAKMVIVLFRwTMKYRVHDLVLEHNHEL 113
                     6*****************9998.8999****************9999.999*******************999****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MDCSKLAEDG TPELGMEFNS EENAYKFYNK YAFKMGFSVR KDYLNKDKDG VTTSRRYSCC  60
KEGVKRKYEG DVMPKRTRAS TKTGCGAKMV IVLFRWTMKY RVHDLVLEHN HELHIAQCAH  120
MMPSQRKVSV AQEFQAEISE DAGFSLKQSH ELMGKEAGGM DNVRYTRDDL KRYFRTRRVR  180
SLKYGETDSM LNYFQEQTLE NPSFFHAVQL DCEEQIMKSF GLMQEC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-27FAR1 family protein