PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027183349.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family BBR-BPC
Protein Properties Length: 233aa    MW: 25690.6 Da    PI: 10.7478
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027183349.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind2232.5e-6863233127301
       GAGA_bind 127 reeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrq 221
                     +  +  +++  ++++ ++k++  +++ +      +++ k++kkk++++kk++++++    ++ e+k+ dlv ++ ++D s++P+P CsCtG+ r 
  XP_027183349.1  63 PPLHGPTKNRFVTKPVKIKKNWPPSNDAC--PSNKSRPKQPKKKPSTTKKTKRPPKIG--VNIERKNPDLVYDEAKFDFSRVPPPFCSCTGVARA 153
                     44555555555666666666666663333..334455666777778888888888865..99********************************* PP

       GAGA_bind 222 CYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     CYkWG+G WqS+CC t++ +yPLP+s+ r+gaR+ grKmS+ga++klL + a+eG dls+p+DLk+hWAkHGtnkfvti+
  XP_027183349.1 154 CYKWGSGSWQSSCCNTNLCQYPLPMSPSRPGARVPGRKMSHGAYTKLLCRFATEGRDLSQPIDLKNHWAKHGTNKFVTIK 233
                     *******************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MVAFSKRCSM ASEVNHSEPP FPQFPGAYPG ASFSSSGFAF HPSQATQMDS KAGIAAVPIR  60
SVPPLHGPTK NRFVTKPVKI KKNWPPSNDA CPSNKSRPKQ PKKKPSTTKK TKRPPKIGVN  120
IERKNPDLVY DEAKFDFSRV PPPFCSCTGV ARACYKWGSG SWQSSCCNTN LCQYPLPMSP  180
SRPGARVPGR KMSHGAYTKL LCRFATEGRD LSQPIDLKNH WAKHGTNKFV TIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.34e-56BBR-BPC family protein