PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027183121.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | Trihelix | ||||||||
Protein Properties | Length: 587aa MW: 66080.1 Da PI: 6.385 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 93.3 | 2.4e-29 | 424 | 508 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev aLi++r+++e++++r k+plWe++s+ m++ gf+rs+k+Ckekwen+nk++kk +e++k+ ++ +tc+yfdql+ XP_027183121.1 424 RWPKAEVEALIQIRSSLEQKFQRPGIKGPLWEQISNSMASMGFQRSAKRCKEKWENINKYFKKSRENAKQC-RKKFKTCQYFDQLD 508 8********************************************************************97.66678********8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 587 aa Download sequence |
MGENHQQQPV FSANQSHQYN HQQPYIFQET QNLQTIPDFF HYHHHFQALL QQQRRLQDQL 60 QQCVLGQENV VSTSATTAAV AGNNIRPSVS FFPLNFKPPD LNENITSSKN GGLDDDGSED 120 DLFRRNSAAA AALAMASPHY CWQNQEDSAT AIRQPFWKPL CTNISDGNNN SQDKEVRPEM 180 HQNKYYKSSE DTEQMNSSLE NSKNRLFGEL ESICRSASVA SEANKTGGAS AGNLATTFST 240 CLPITLDKHN TNAGATAAAA AIGHCHDGSE SFSGHEAPVA VVSKNKKRKK LKDELSSMAI 300 FFEGLVHQLM DHQEALHSNF MNAIERLDKE RREREDAWRR QELEKLEQDM AARARERALA 360 SSREASIVSY LEKITGQSIK LPPRNHPSDF QLAMISSGAM NGELSPSTSK VCRDDLSINM 420 TSRRWPKAEV EALIQIRSSL EQKFQRPGIK GPLWEQISNS MASMGFQRSA KRCKEKWENI 480 NKYFKKSREN AKQCRKKFKT CQYFDQLDQL HSKSQLANGG SYSCSSSSEH QAKPNNENQL 540 PNPIEGLVPA RNFRQGEFYC IPSMNVSEEE EEEEGEDGNV DYPDEGD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 286 | 290 | KKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76890.2 | 5e-36 | Trihelix family protein |