PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027182994.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 781aa MW: 89100.8 Da PI: 6.3856

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027182994.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.3	1.5e-24	97	186	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 fY++YAk vGF+vrk ++++ ++n ++ r +vCs+eg+re++ + +++r +++++r+gC a+++vk +k +gk++vt++ +eHnHelap XP_027182994.1 97 FYETYAKLVGFNVRKVHTRRDENN-KVRYRGWVCSREGFRENRINMWDRKRDPKPVSRIGCLAHFRVKYDKkSGKYVVTSFIKEHNHELAP 186 9**************9999555.59**************************************999**************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 781 aa Download sequence
MDLMAKCACG HVAVDVCDTG SGDSDSGEGN RRSGKENGMN IDTENNNRSK TAGAEPDTRT 60 DDARDVSWVD LDKGLHELTE NDVFHLKFDC DEEAGLFYET YAKLVGFNVR KVHTRRDENN 120 KVRYRGWVCS REGFRENRIN MWDRKRDPKP VSRIGCLAHF RVKYDKKSGK YVVTSFIKEH 180 NHELAPPIVV PFLQPQKRAR RVAVDVGFTK KDIEREWASS DIRDGDSRCV LTHSVLAYLS 240 AKNDYDPGLF YKYDLDEENQ LCSIFWADSK SRADYAFFGD VLVLNTKFRK NAYEKPFIIL 300 AGLNNHDQTT VFGCALLGGK TAETYVWLLE TFLEATNHKA PVSVITDGDK AIEEAIQKTF 360 PTSQHRICRW HLFKDAVSSA GDSSSFGPEF KKCMEENWNP EEFEVAWIKL VEKYGLQGHP 420 WFEETYSRRT KWAEAYLREH FFAGLTSIRG HGMNTYFTRF LQVWHKLHEF VRHYDKALVC 480 LREDEAKADS ESESAYPAFC TILRDLERHA ADVFTRSMFL KVREQIMGDA MLILSGKEYL 540 KDDACWLYKF SEYMKPDAIW KVRYDPSNQS LKCSCFKLVT DGVPCCHMVS VMKAEHLREF 600 PRCCIHKRWT KCARSEIDSG IDIQALNMAT QVARFRILNS TCSEMNYYAS QTIQGFNETR 660 SLISKITSRV KHIYNSKGEV DETAPEVSLD ADGSTTRSGM HDPKSTNSSG QCDATAVETP 720 QPDDCSQRSH DQTTSQQLRL NHGLQTSEGT GTTDDGEGRT QNGEFSGAPS QPINLIWEDN 780 D

Sequence ? help Back to Top

Protein Sequence Length: 781 aa Download sequence

MDLMAKCACG HVAVDVCDTG SGDSDSGEGN RRSGKENGMN IDTENNNRSK TAGAEPDTRT  60
DDARDVSWVD LDKGLHELTE NDVFHLKFDC DEEAGLFYET YAKLVGFNVR KVHTRRDENN  120
KVRYRGWVCS REGFRENRIN MWDRKRDPKP VSRIGCLAHF RVKYDKKSGK YVVTSFIKEH  180
NHELAPPIVV PFLQPQKRAR RVAVDVGFTK KDIEREWASS DIRDGDSRCV LTHSVLAYLS  240
AKNDYDPGLF YKYDLDEENQ LCSIFWADSK SRADYAFFGD VLVLNTKFRK NAYEKPFIIL  300
AGLNNHDQTT VFGCALLGGK TAETYVWLLE TFLEATNHKA PVSVITDGDK AIEEAIQKTF  360
PTSQHRICRW HLFKDAVSSA GDSSSFGPEF KKCMEENWNP EEFEVAWIKL VEKYGLQGHP  420
WFEETYSRRT KWAEAYLREH FFAGLTSIRG HGMNTYFTRF LQVWHKLHEF VRHYDKALVC  480
LREDEAKADS ESESAYPAFC TILRDLERHA ADVFTRSMFL KVREQIMGDA MLILSGKEYL  540
KDDACWLYKF SEYMKPDAIW KVRYDPSNQS LKCSCFKLVT DGVPCCHMVS VMKAEHLREF  600
PRCCIHKRWT KCARSEIDSG IDIQALNMAT QVARFRILNS TCSEMNYYAS QTIQGFNETR  660
SLISKITSRV KHIYNSKGEV DETAPEVSLD ADGSTTRSGM HDPKSTNSSG QCDATAVETP  720
QPDDCSQRSH DQTTSQQLRL NHGLQTSEGT GTTDDGEGRT QNGEFSGAPS QPINLIWEDN  780
D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-88	FAR1 family protein