PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027182308.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 844aa MW: 92496.7 Da PI: 6.7318

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027182308.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.6	2.7e-19	314	413	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ +++ e+ ++++d +g++W++++++ +++s++yvl+ G + +L++gD+v+F++++ +++ XP_027182308.1 314 FEKVLSASDAGRIGRLVLPKACAEAYfpPINQSEGLPIRIQDVKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVTFSRID-PGGQ 406 99************************666667778***********99899999999.*******************887.6666 PP .EEEEE- CS B3 92 lvvkvfr 98 lv+++++ XP_027182308.1 407 LVMGFRK 413 6666655 PP

Sequence ? help Back to Top
Protein Sequence Length: 844 aa Download sequence
MGSKICMNEA CRLTTSPEWK QGWGLKSGGF ATLCSSCGTA YENLVFCEKF HLDEDGWREC 60 KICRKRIHCG CVASKMLHEF LDFGGVGCIT CVKQMDTPSL RTVKILGDEI PNGTIGHRSF 120 DSLLQLCNNV EVNGSKKMFK PHRVGTNASL GQKKGEGTAL PFEQVNTSSP NFTPQSVGSS 180 MFVKPEISRQ NQGFKDMAES LAQPSVNFSL SNALCASGSA LPISEGIVEG SEQNRVSTAQ 240 QGQRARQILP KPPKPGSSVG SENTKGMGSQ TRIARPPAEG RGRSQLLPRY WPRITDQELQ 300 QISGDLKSTV VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPINQSEGLP IRIQDVKGKE 360 WTFQFRFWPN NNSRMYVLEG VTPCIQNMQL QAGDTVTFSR IDPGGQLVMG FRKSTTNVET 420 QTQDPQPSGL PNGGSPGETS YLVASDNMLA ISENGNNGGQ IHEDSSQRNI LIPEKKKARN 480 IGLKNKRLLM HSDDAMELRV TWEEAQELLR PPTNSPTIIK IEDCEFEEYD QEPPIFGKRT 540 IFTVQPSGQQ EQWAQCDNCS KWRRLPMHVL VPARWTCPDN AWVSNSLCSA PDDINPRELE 600 ALNIASKDFK RRRIVETKVA EDYEPSGLDA LATAAVLGDN MGDLTEMSVG ATTKHPRHRP 660 GCSCIVCIQP PSGKGKHPTS CKCNVCLTVK RRFKTLMMRK KKRQSDREAE LLQGKDEETP 720 PLDMSEMEGA AEHALLLTNH SDAERSQNGS LMEAGESNKG QLDLNCHPSR EEDMLAEAAA 780 GINLATLIDA ASIPLDVYMR QDGVASVSHH LLPSHAPGDG EGSLPEEGCS ASANMGPEKK 840 GKEE

Sequence ? help Back to Top

Protein Sequence Length: 844 aa Download sequence

MGSKICMNEA CRLTTSPEWK QGWGLKSGGF ATLCSSCGTA YENLVFCEKF HLDEDGWREC  60
KICRKRIHCG CVASKMLHEF LDFGGVGCIT CVKQMDTPSL RTVKILGDEI PNGTIGHRSF  120
DSLLQLCNNV EVNGSKKMFK PHRVGTNASL GQKKGEGTAL PFEQVNTSSP NFTPQSVGSS  180
MFVKPEISRQ NQGFKDMAES LAQPSVNFSL SNALCASGSA LPISEGIVEG SEQNRVSTAQ  240
QGQRARQILP KPPKPGSSVG SENTKGMGSQ TRIARPPAEG RGRSQLLPRY WPRITDQELQ  300
QISGDLKSTV VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPINQSEGLP IRIQDVKGKE  360
WTFQFRFWPN NNSRMYVLEG VTPCIQNMQL QAGDTVTFSR IDPGGQLVMG FRKSTTNVET  420
QTQDPQPSGL PNGGSPGETS YLVASDNMLA ISENGNNGGQ IHEDSSQRNI LIPEKKKARN  480
IGLKNKRLLM HSDDAMELRV TWEEAQELLR PPTNSPTIIK IEDCEFEEYD QEPPIFGKRT  540
IFTVQPSGQQ EQWAQCDNCS KWRRLPMHVL VPARWTCPDN AWVSNSLCSA PDDINPRELE  600
ALNIASKDFK RRRIVETKVA EDYEPSGLDA LATAAVLGDN MGDLTEMSVG ATTKHPRHRP  660
GCSCIVCIQP PSGKGKHPTS CKCNVCLTVK RRFKTLMMRK KKRQSDREAE LLQGKDEETP  720
PLDMSEMEGA AEHALLLTNH SDAERSQNGS LMEAGESNKG QLDLNCHPSR EEDMLAEAAA  780
GINLATLIDA ASIPLDVYMR QDGVASVSHH LLPSHAPGDG EGSLPEEGCS ASANMGPEKK  840
GKEE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	610	614	KRRRI
2	690	701	KRRFKTLMMRKK
3	690	703	KRRFKTLMMRKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	0.0	B3 family protein