PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027182103.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 533aa MW: 59895.5 Da PI: 7.4457

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027182103.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.7	1e-13	340	383	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + Er+RR+riN+++ +Lr+l+P+ + K++Ka++L A +YI++Lq XP_027182103.1 340 ITERNRRHRINHGLLTLRSLVPNiS------KMDKASTLADAYDYIQELQ 383 68*******************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence
MLQQQKGTKS SSCSSKTIRG TSQQGQAPDR YKEVFERFKD MAALDQALER LRVLVKNNVW 60 DYCIVWKLGD DPSSFIEWRG CCCSGGNWLE NVKEESGKDQ YLFAQCRDGD FKHPIRTKAC 120 EKLAKFPLSI PLYSGIHGEV VMSNQARWHV NSNNTSSDEA IGTQVLVPVA GGLIELFSTN 180 LVQENQQIID FILAQYVPVE LETMASHRRT QLNAAEPPHK PFLDDCFNNL PASVCHMIPV 240 PNLQYPTFIP NSSNHPSFEG SSISSDLPKD YQLLNVCSGS ASCSTSPEKS SGRHPGNLDS 300 RRMKDPSCGF GSAKWAAETN ENLRGRNKTE RDNYHSKNLI TERNRRHRIN HGLLTLRSLV 360 PNISKMDKAS TLADAYDYIQ ELQKSVEEYQ GKLRDLAEQE ANMYSSEQEV PKPCREIQRT 420 DYQPTIEQGD SRRHSSTNDK KQGKVKIEVS QIGTRDFLVK IICTQKRGGF LRLMQAMDSF 480 GLQVTDANVT TSNGLVLNVL KAEAFSEEIQ PTTLKNSLME LFLQDGQGKI QLA

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence

MLQQQKGTKS SSCSSKTIRG TSQQGQAPDR YKEVFERFKD MAALDQALER LRVLVKNNVW  60
DYCIVWKLGD DPSSFIEWRG CCCSGGNWLE NVKEESGKDQ YLFAQCRDGD FKHPIRTKAC  120
EKLAKFPLSI PLYSGIHGEV VMSNQARWHV NSNNTSSDEA IGTQVLVPVA GGLIELFSTN  180
LVQENQQIID FILAQYVPVE LETMASHRRT QLNAAEPPHK PFLDDCFNNL PASVCHMIPV  240
PNLQYPTFIP NSSNHPSFEG SSISSDLPKD YQLLNVCSGS ASCSTSPEKS SGRHPGNLDS  300
RRMKDPSCGF GSAKWAAETN ENLRGRNKTE RDNYHSKNLI TERNRRHRIN HGLLTLRSLV  360
PNISKMDKAS TLADAYDYIQ ELQKSVEEYQ GKLRDLAEQE ANMYSSEQEV PKPCREIQRT  420
DYQPTIEQGD SRRHSSTNDK KQGKVKIEVS QIGTRDFLVK IICTQKRGGF LRLMQAMDSF  480
GLQVTDANVT TSNGLVLNVL KAEAFSEEIQ PTTLKNSLME LFLQDGQGKI QLA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	6e-68	bHLH family protein