PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027181854.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 590aa    MW: 66293.7 Da    PI: 6.211
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027181854.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS284.92.3e-872105811374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely.kal.ppsetsekn...sseelaalkl.fsevsP 89 
                     lv+ Ll+ Ae v+++++e+a +lL r  +l+s +g++++Rl+ yf  AL++r+ r++ ++  + l ++++    +   + + l++ k+  ++  P
  XP_027181854.1 210 LVQHLLASAELVAKKQFERAGKLLLRCDKLSSDQGNTIERLVYYFSGALHERIDRETGTVTpEGLgKMQSI---DildMMSGLTSAKIsMQKSVP 301
                     6899***************************************************4444440333222222...123444444444446****** PP

            GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                     + ++++++  q +l+ v+ ++++Hi+D++i  G+++  L+qaLa+R+ ++   l++T++g    +sk ++eetg++La+fA++l+++f++n++++
  XP_027181854.1 302 FGQVCQFAGTQGVLDHVADATKIHIVDLEIRTGMHYTILMQALATRSqNPLEYLKVTAIGT---KSKAKIEETGRQLASFAQALKLKFSINIIMV 393
                     ***********************************************455569********...689**************************** PP

            GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                      ++ dl+ + ++++ +Ea+aV + +  + + +++  les    ++++vk ++P+v++v+e e +hns+ F++rf+eal +y a+fdsle  l ++
  XP_027181854.1 394 ADIMDLNENLFEINADEAVAVWVEYYFMFMIRRQDMLES----LMNVVKAINPRVMIVTEVEGNHNSPVFVTRFIEALFFYGAFFDSLEDCLKHD 484
                     ***********************9999999977777777....**************************************************** PP

            GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372
                      ++r+ vE ++l+++i+n+va+eg+er+ r+  ++ W++ + ++G+ +v+ls + + qa+l+l++++ +   +++++ + l++gWk+ p+ s+Sa
  XP_027181854.1 485 PKNRMIVESVYLSQAIRNIVATEGEERTIRQVAVNVWKAFFARFGMVQVELSMSSMYQANLVLKNFEcGSSCTLNKDGKGLIIGWKGTPIHSLSA 579
                     *******************************************************************9999************************ PP

            GRAS 373 Wr 374
                     W+
  XP_027181854.1 580 WK 581
                     *8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    
MEMFHSDHFE FLGVSGKYDS TEGFQFEDHG REEKRNCLIT NNDEREASKG IGSFYPGTLG  60
SNQVHDSTAE KGVIYSKLHQ EQQLKDLTGF ACFNDPHEEE ITKLADDVAF ANSEFNDANK  120
ERPYAGSLQI LKNYRRRFRK LSVEKMDLPS YQGCTLITGH KLSTDAILKL AAQNFIQSSS  180
KGTTESFELS HPYASSFGGL CVEDTKDVKL VQHLLASAEL VAKKQFERAG KLLLRCDKLS  240
SDQGNTIERL VYYFSGALHE RIDRETGTVT PEGLGKMQSI DILDMMSGLT SAKISMQKSV  300
PFGQVCQFAG TQGVLDHVAD ATKIHIVDLE IRTGMHYTIL MQALATRSQN PLEYLKVTAI  360
GTKSKAKIEE TGRQLASFAQ ALKLKFSINI IMVADIMDLN ENLFEINADE AVAVWVEYYF  420
MFMIRRQDML ESLMNVVKAI NPRVMIVTEV EGNHNSPVFV TRFIEALFFY GAFFDSLEDC  480
LKHDPKNRMI VESVYLSQAI RNIVATEGEE RTIRQVAVNV WKAFFARFGM VQVELSMSSM  540
YQANLVLKNF ECGSSCTLNK DGKGLIIGWK GTPIHSLSAW KFGCDSTLIF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-56GRAS family protein