PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027181320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MYB_related | ||||||||
Protein Properties | Length: 238aa MW: 26915.9 Da PI: 5.4293 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.8 | 6.9e-15 | 10 | 53 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg T+ E++l++++ +lG++ W++Ia++++ gRt++++k++w++ XP_027181320.1 10 RGDITAAEEDLIIRLQSLLGNR-WSLIAARLP-GRTDNEIKNHWNT 53 67789*****************.*********.***********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence |
MNYLRPGIKR GDITAAEEDL IIRLQSLLGN RWSLIAARLP GRTDNEIKNH WNTRLLKRLH 60 KGGIQPQKSS TSLSKKSSKQ PTKKKSNKKL PDHFHNTTAT SSTEDVLHRE EFSGNDNATI 120 NMAQVYRPKP IKICSDFAKS NSFGSVASGS TNKSSSNQEE GEEVVDKLEE EAKTSQVSDI 180 SWSSFELDDQ SYERIFEISD ENQILFYDDD DCDLSLQAAP VSDINLLDKV YDEYLRLL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 4e-28 | MYB family protein |