PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027181279.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 382aa    MW: 41645.5 Da    PI: 7.9505
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027181279.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.11.5e-08131152426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     + C++f++ G Ck Gd+C FaHg
  XP_027181279.1 131 SACPDFRK-GACKKGDSCEFAHG 152
                     67******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    
MMIGDHSPRS NPTVQVPPWD FLDDHRTANI HSPYSISLNG GNASSFELAL DNLTALQRYL  60
PSNTGSDDVV SDTDDLDIPV DAFSCDQFRM FEFKVRRCAR ARSHDWTECP YAHPGEKARR  120
RDPRKYHYSG SACPDFRKGA CKKGDSCEFA HGVFECWLHP ARYRTQPCKD GTQCRRRVCF  180
FAHTPDQLRV LPQTECYDGS PSRLGCNSPG RHAYDSGVSP LNAKNGAFGS SPTSVLSSPP  240
SSPASESPPM SPSGAVSLNS VSGLAQSMRN LQIGNTRMTA GSPPWGIQVG GGFCSPRSPS  300
TLRPGFTSLP ATPTPAPAPA RTRSGLGAFD LWDKACQEEP AMERVESGRD LRAKIYAKLS  360
KENSLESATP VPDFGWISEL VK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-109C3H family protein