PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027181008.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

ARR-B

Protein Properties

Length: 585aa MW: 65120.8 Da PI: 6.2342

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027181008.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89	4.3e-28	342	395	2	56
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 +++WtpeLH++Fv+aveqL G+++A+P++ilelmkv+gLt+++v+SHLQkYR++ XP_027181008.1 342 SKVDWTPELHKKFVQAVEQL-GIDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 395 6899**************.******************************96 PP
2	Myb_DNA-binding	44.6	3.4e-14	344	393	2	48
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WT+e+++++v+av+qlG + +++I + m +g+t+ ++ s++qky+ XP_027181008.1 344 VDWTPELHKKFVQAVEQLGIDqaIPSRILELMKvEGLTRHNVASHLQKYR 393 57***********************************************7 PP
3	Response_reg	34.4	1.2e-12	52	157	2	109
EEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS Response_reg 2 livdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 l+++ + + +r le+ +y +v + + eal + +k +++ ++ ++ +++G+ +k +++++ +lp i++++++ +++ +++ +Ga XP_027181008.1 52 LLIESDACSAVEMRLKLEEMDY-IVSIFCNENEALSAISNKSecFHVAIVEVNTQNSSGI--FKFLETAN-DLPTIMISDNNCRSTMMKCIALGA 142 666666666667778889**.***********999999*********995..78888877.9******************* PP SEEEESS--HHHHHH CS Response_reg 95 kdflsKpfdpeelvk 109 +fl Kp++ ++l + XP_027181008.1 143 VEFLQKPVSDDKLQN 157 ********99976 PP

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence
MFDPKFLMHL VLSLSCFRSQ KCCKKEDAMP AMVCTADELL GWKDFPKGLK VLLIESDACS 60 AVEMRLKLEE MDYIVSIFCN ENEALSAISN KSECFHVAIV EVNTQNSSGI FKFLETANDL 120 PTIMISDNNC RSTMMKCIAL GAVEFLQKPV SDDKLQNIWQ HVVHKAFNAG GKDVSEALKP 180 VKESLISMLQ LQFGNAETGK QASVEAEQEN NQDLLSGCDK YPAPSTPQLK QGERSLDDGD 240 CQDQANFSME QDSAEQDGEC KSVETTCGNS IFECTALGSP ASGEDAVKEE HESTNCCRTE 300 INTTTCYEGK DRPSNKTSNA AGLNRSSAVR DTCGIKASKK RSKVDWTPEL HKKFVQAVEQ 360 LGIDQAIPSR ILELMKVEGL TRHNVASHLQ KYRMHRRHIL PKENERRWPH PGGSAQRNYY 420 PHKPVMAFPP YHPNHTIPGG QVYPAWIPPG TYTGGIHIWG SPYYPGWQVP NESWYWKPYS 480 VTHADAWGCP VMPQTVGSYP QFAQQTAPDF QTTKEMQYTG STLLNPSDLH AAEEVIDQVV 540 KEAISKPWLP LPLGLKPPST ECVLNELSKQ GISKIPPHTN APNIR

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence

MFDPKFLMHL VLSLSCFRSQ KCCKKEDAMP AMVCTADELL GWKDFPKGLK VLLIESDACS  60
AVEMRLKLEE MDYIVSIFCN ENEALSAISN KSECFHVAIV EVNTQNSSGI FKFLETANDL  120
PTIMISDNNC RSTMMKCIAL GAVEFLQKPV SDDKLQNIWQ HVVHKAFNAG GKDVSEALKP  180
VKESLISMLQ LQFGNAETGK QASVEAEQEN NQDLLSGCDK YPAPSTPQLK QGERSLDDGD  240
CQDQANFSME QDSAEQDGEC KSVETTCGNS IFECTALGSP ASGEDAVKEE HESTNCCRTE  300
INTTTCYEGK DRPSNKTSNA AGLNRSSAVR DTCGIKASKK RSKVDWTPEL HKKFVQAVEQ  360
LGIDQAIPSR ILELMKVEGL TRHNVASHLQ KYRMHRRHIL PKENERRWPH PGGSAQRNYY  420
PHKPVMAFPP YHPNHTIPGG QVYPAWIPPG TYTGGIHIWG SPYYPGWQVP NESWYWKPYS  480
VTHADAWGCP VMPQTVGSYP QFAQQTAPDF QTTKEMQYTG STLLNPSDLH AAEEVIDQVV  540
KEAISKPWLP LPLGLKPPST ECVLNELSKQ GISKIPPHTN APNIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18020.3	1e-149	ARR-B family protein