PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027181006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | ARR-B | ||||||||
Protein Properties | Length: 586aa MW: 65248.9 Da PI: 6.2342 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 82.9 | 3.4e-26 | 342 | 396 | 2 | 56 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ.kYRla 56 +++WtpeLH++Fv+aveqL G+++A+P++ilelmkv+gLt+++v+SHLQ kYR++ XP_027181006.1 342 SKVDWTPELHKKFVQAVEQL-GIDQAIPSRILELMKVEGLTRHNVASHLQqKYRMH 396 6899****************.****************************549**86 PP | |||||||
2 | Myb_DNA-binding | 39.5 | 1.3e-12 | 344 | 391 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqk 46 WT+e+++++v+av+qlG + +++I + m +g+t+ ++ s++q+ XP_027181006.1 344 VDWTPELHKKFVQAVEQLGIDqaIPSRILELMKvEGLTRHNVASHLQQ 391 57********************************************96 PP | |||||||
3 | Response_reg | 34.4 | 1.2e-12 | 52 | 157 | 2 | 109 |
EEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS Response_reg 2 livdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 l+++ + + +r le+ +y +v + + eal + +k +++ ++ ++ +++G+ +k +++++ +lp i++++++ +++ +++ +Ga XP_027181006.1 52 LLIESDACSAVEMRLKLEEMDY-IVSIFCNENEALSAISNKSecFHVAIVEVNTQNSSGI--FKFLETAN-DLPTIMISDNNCRSTMMKCIALGA 142 666666666667778889****.***************999999*************995..78888877.9*********************** PP SEEEESS--HHHHHH CS Response_reg 95 kdflsKpfdpeelvk 109 +fl Kp++ ++l + XP_027181006.1 143 VEFLQKPVSDDKLQN 157 **********99976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 586 aa Download sequence |
MFDPKFLMHL VLSLSCFRSQ KCCKKEDAMP AMVCTADELL GWKDFPKGLK VLLIESDACS 60 AVEMRLKLEE MDYIVSIFCN ENEALSAISN KSECFHVAIV EVNTQNSSGI FKFLETANDL 120 PTIMISDNNC RSTMMKCIAL GAVEFLQKPV SDDKLQNIWQ HVVHKAFNAG GKDVSEALKP 180 VKESLISMLQ LQFGNAETGK QASVEAEQEN NQDLLSGCDK YPAPSTPQLK QGERSLDDGD 240 CQDQANFSME QDSAEQDGEC KSVETTCGNS IFECTALGSP ASGEDAVKEE HESTNCCRTE 300 INTTTCYEGK DRPSNKTSNA AGLNRSSAVR DTCGIKASKK RSKVDWTPEL HKKFVQAVEQ 360 LGIDQAIPSR ILELMKVEGL TRHNVASHLQ QKYRMHRRHI LPKENERRWP HPGGSAQRNY 420 YPHKPVMAFP PYHPNHTIPG GQVYPAWIPP GTYTGGIHIW GSPYYPGWQV PNESWYWKPY 480 SVTHADAWGC PVMPQTVGSY PQFAQQTAPD FQTTKEMQYT GSTLLNPSDL HAAEEVIDQV 540 VKEAISKPWL PLPLGLKPPS TECVLNELSK QGISKIPPHT NAPNIR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18020.3 | 1e-147 | ARR-B family protein |