PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027181003.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

ARR-B

Protein Properties

Length: 587aa MW: 65377.1 Da PI: 6.2342

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027181003.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	82.9	3.4e-26	343	397	2	56
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ.kYRla 56 +++WtpeLH++Fv+aveqL G+++A+P++ilelmkv+gLt+++v+SHLQ kYR++ XP_027181003.1 343 SKVDWTPELHKKFVQAVEQL-GIDQAIPSRILELMKVEGLTRHNVASHLQqKYRMH 397 6899**************.************************54986 PP
2	Myb_DNA-binding	39.5	1.3e-12	345	392	2	46
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqk 46 WT+e+++++v+av+qlG + +++I + m +g+t+ ++ s++q+ XP_027181003.1 345 VDWTPELHKKFVQAVEQLGIDqaIPSRILELMKvEGLTRHNVASHLQQ 392 57********************************************96 PP
3	Response_reg	34.4	1.2e-12	52	157	2	109
EEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS Response_reg 2 livdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 l+++ + + +r le+ +y +v + + eal + +k +++ ++ ++ +++G+ +k +++++ +lp i++++++ +++ +++ +Ga XP_027181003.1 52 LLIESDACSAVEMRLKLEEMDY-IVSIFCNENEALSAISNKSecFHVAIVEVNTQNSSGI--FKFLETAN-DLPTIMISDNNCRSTMMKCIALGA 142 666666666667778889**.***********999999*********995..78888877.9******************* PP SEEEESS--HHHHHH CS Response_reg 95 kdflsKpfdpeelvk 109 +fl Kp++ ++l + XP_027181003.1 143 VEFLQKPVSDDKLQN 157 ********99976 PP

Sequence ? help Back to Top
Protein Sequence Length: 587 aa Download sequence
MFDPKFLMHL VLSLSCFRSQ KCCKKEDAMP AMVCTADELL GWKDFPKGLK VLLIESDACS 60 AVEMRLKLEE MDYIVSIFCN ENEALSAISN KSECFHVAIV EVNTQNSSGI FKFLETANDL 120 PTIMISDNNC RSTMMKCIAL GAVEFLQKPV SDDKLQNIWQ HVVHKQAFNA GGKDVSEALK 180 PVKESLISML QLQFGNAETG KQASVEAEQE NNQDLLSGCD KYPAPSTPQL KQGERSLDDG 240 DCQDQANFSM EQDSAEQDGE CKSVETTCGN SIFECTALGS PASGEDAVKE EHESTNCCRT 300 EINTTTCYEG KDRPSNKTSN AAGLNRSSAV RDTCGIKASK KRSKVDWTPE LHKKFVQAVE 360 QLGIDQAIPS RILELMKVEG LTRHNVASHL QQKYRMHRRH ILPKENERRW PHPGGSAQRN 420 YYPHKPVMAF PPYHPNHTIP GGQVYPAWIP PGTYTGGIHI WGSPYYPGWQ VPNESWYWKP 480 YSVTHADAWG CPVMPQTVGS YPQFAQQTAP DFQTTKEMQY TGSTLLNPSD LHAAEEVIDQ 540 VVKEAISKPW LPLPLGLKPP STECVLNELS KQGISKIPPH TNAPNIR

Sequence ? help Back to Top

Protein Sequence Length: 587 aa Download sequence

MFDPKFLMHL VLSLSCFRSQ KCCKKEDAMP AMVCTADELL GWKDFPKGLK VLLIESDACS  60
AVEMRLKLEE MDYIVSIFCN ENEALSAISN KSECFHVAIV EVNTQNSSGI FKFLETANDL  120
PTIMISDNNC RSTMMKCIAL GAVEFLQKPV SDDKLQNIWQ HVVHKQAFNA GGKDVSEALK  180
PVKESLISML QLQFGNAETG KQASVEAEQE NNQDLLSGCD KYPAPSTPQL KQGERSLDDG  240
DCQDQANFSM EQDSAEQDGE CKSVETTCGN SIFECTALGS PASGEDAVKE EHESTNCCRT  300
EINTTTCYEG KDRPSNKTSN AAGLNRSSAV RDTCGIKASK KRSKVDWTPE LHKKFVQAVE  360
QLGIDQAIPS RILELMKVEG LTRHNVASHL QQKYRMHRRH ILPKENERRW PHPGGSAQRN  420
YYPHKPVMAF PPYHPNHTIP GGQVYPAWIP PGTYTGGIHI WGSPYYPGWQ VPNESWYWKP  480
YSVTHADAWG CPVMPQTVGS YPQFAQQTAP DFQTTKEMQY TGSTLLNPSD LHAAEEVIDQ  540
VVKEAISKPW LPLPLGLKPP STECVLNELS KQGISKIPPH TNAPNIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18020.3	1e-145	ARR-B family protein