PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027180723.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HSF
Protein Properties Length: 519aa    MW: 56765.1 Da    PI: 4.6624
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027180723.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.51.6e-36411322102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y++++d+++++++sws+++nsfvv+d+ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++
  XP_027180723.1  41 FLVKTYDMVDDPSTDKIVSWSATNNSFVVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKS 126
                     9********************999*****************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i r+k 
  XP_027180723.1 127 ISRRKP 132
                     ***986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    
MEASQSDGGR GKAASTAADG GGGGPSPAPA PMPNANAPPP FLVKTYDMVD DPSTDKIVSW  60
SATNNSFVVW DPPEFARDLL PKYFKHNNFS SFVRQLNTYG FRKVDPDRWE FANEGFLRGQ  120
KHLLKSISRR KPAHGHPQPQ QQPHGQSPSV GPCVEVGKFG LEEEVERLKR DKNVLMQELV  180
RLRQQQQTTD GQLQAMVQRL QGMEQRQQQM MSFLAKAVNS PGFLAQFVQQ QSDSGRRITE  240
GSKKRRLKQD GLSDDHSVGP TDGQIVKYQP MMNEAAKAML RQLMKVDASP RLENFSNSSD  300
NFLLSDGSTQ STAMDCGNSS NRVSGVTLQE VTPSAGQPFV PAASSVIGQS ASAAISDSHS  360
STLGATSDLN GMVGAQDLHP LTLPSPDTIM PELSQLQEIG QESNVDILGT ETENGAFMDA  420
TSLAANGKLA LDIDDEQIEW DSSLLDDMED LPGSIDPFWE KFLQSPQQSI ETEDLNSNQM  480
EDLSKGSQIK PVDNGWNRTQ HMEQLTEQMG LLTSEGKKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243248KKRRLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-112HSF family protein