PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027180376.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 331aa MW: 36334.1 Da PI: 7.6521

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027180376.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26	1.6e-08	7	26	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++ rtG+Ck+G+ C+++H++ XP_027180376.1 7 HYIRTGICKFGSACRYHHPQ 26 899***************97 PP
2	zf-CCCH	33.7	6.1e-11	46	71	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++++rt tCk+G CkF H++ XP_027180376.1 46 DEKPCPYYMRTSTCKFGVMCKFDHPQ 71 5789********************97 PP
3	zf-CCCH	30.6	5.7e-10	178	203	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++f tG CkyG+ Ck+ H++ XP_027180376.1 178 DQPECHDFVNTGSCKYGADCKYYHPR 203 689*********************96 PP
4	zf-CCCH	31.9	2.2e-10	223	248	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+++a G C+yG++Ck+ H+ XP_027180376.1 223 PGQAVCSYYAMHGLCRYGPTCKYDHP 248 57899********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence
MCIYLQHYIR TGICKFGSAC RYHHPQDRHN SDPLLLNIWG FPMRKDEKPC PYYMRTSTCK 60 FGVMCKFDHP QPVSAANGLH VTGSTAYGST TLAFMTSSSI PYVGGVSDLS IPKTNSIINP 120 SVQGSQSYMP LYLSPFQCWS TYMGTMGGSS ILDDLADQTF GGQIPLLSSS SHQPDRPDQP 180 ECHDFVNTGS CKYGADCKYY HPRNKVAPTT SNLLGPLGLP LRPGQAVCSY YAMHGLCRYG 240 PTCKYDHPLA GYVGVPSLVF NTSVLPYQWN SPTVPSTETS PSMSSKLPDL SRSSEVTMQK 300 GQNSNTEKLL HIGAPPSTSQ RPLEVQQDES D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	3e-53	C3H family protein