PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027179939.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 359aa MW: 39569.3 Da PI: 4.4743 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.7 | 4.8e-19 | 58 | 111 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k XP_027179939.1 58 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 111 566899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 130.9 | 5e-42 | 57 | 149 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++yd+lk++ e+L++++e+L +e++e XP_027179939.1 57 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDTLKHNYENLQHDNEALIKEIRE 149 69**************************************************************************************99986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 359 aa Download sequence |
MKRLGSSDSL GALMSICPTS TDEHNQGNSH VYPREFQSML EGLDEEGCVE ESGHVPEKKR 60 RLSVDQVKAL EKNFEVENKL EPERKVKLAQ ELGLQPRQVA VWFQNRRARW KTKQLERDYG 120 VLKANYDTLK HNYENLQHDN EALIKEIREL KSKLQDDKSE GKVLVKEEVM VSESDDDKAI 180 DHQAKTSMDD VLAECDEDDD ANELNFVESF NSSNGVMNGA SIFTDFKDGS CDSDSSAILN 240 EENLNNSSSS PNAAISSSGG GVVLQTVPHQ FLISNGGGGG GGSSSTTISN GFQFGHDSKA 300 AILGEAHKSS SSAAAAAAYQ PQFVKIEEHN FFSGDDSCST FFSDDQPPTL HWYCPEEWN |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 58 | 87 | KKRRLSVDQVKALEKNFEVENKLEPERKVK |
2 | 106 | 114 | RRARWKTKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G22430.1 | 3e-67 | HD-ZIP family protein |