PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027179523.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 289aa    MW: 33236.3 Da    PI: 9.6727
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027179523.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3543e-1733123199
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffkv+      +s++l++p  f++++ g++    k ++l+  +g+ W+v +  + +++++++++GW+ F++ + Lk g+f+vF++dg+s f  +v
  XP_027179523.1  33 FFKVF--LPDVSSQQLRVPPLFVKKFsGLV---CKRIKLRCIDGKIWDVDV--EETQEGVFMKNGWQAFADHHLLKLGEFLVFRYDGNSVF--TV 118
                     78888..44555566***********7777...357***************..**********************************9***..** PP

                     EEE-S CS
              B3  95 kvfrk 99 
                     k+fr+
  XP_027179523.1 119 KIFRT 123
                     **996 PP
2B3406.8e-132042871097
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                      ++ + l+l+k f+++++++   +  ++l +e+ ++W vk+++ + ++   +++GW  F k+n+++egD + + +d+   +   +++v+
  XP_027179523.1 204 RTQMHKLMLSKGFISKNNIE--LGSNVMLCNEKEEKWPVKFTHFRDGR-ACIGTGWMAFWKDNRMCEGDKFKLVFDEGrGG--KMITVC 287
                     556688*********99766..5668***************8766664.56899***************988887754233..467666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MTMEKMVKRG RGRPRKDSSS SSYLSFMDVR PEFFKVFLPD VSSQQLRVPP LFVKKFSGLV  60
CKRIKLRCID GKIWDVDVEE TQEGVFMKNG WQAFADHHLL KLGEFLVFRY DGNSVFTVKI  120
FRTHGCKEEA FVREKIAADV KIEPLEDQIA ATEHTSAKHS CNSDGEGNKL DTSRGKQQMS  180
SRFHSQTVQM ERDSEFGSIR SISRTQMHKL MLSKGFISKN NIELGSNVML CNEKEEKWPV  240
KFTHFRDGRA CIGTGWMAFW KDNRMCEGDK FKLVFDEGRG GKMITVCKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1816KRGRGRPRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.19e-29B3 family protein