PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027179033.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 242aa MW: 27660.8 Da PI: 4.3968 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50.9 | 2e-16 | 31 | 71 | 10 | 50 |
HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 + +f kR+ +lKK ELSvLCd++v+ i++ +gk+ +++ XP_027179033.1 31 KQSFRKRKDCVLKKSMELSVLCDIKVCAIVIDANGKVETWP 71 569*************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence |
MVAMATNSEE ENRGKEDKKN KRIHPTMRAK KQSFRKRKDC VLKKSMELSV LCDIKVCAIV 60 IDANGKVETW PENKDDLMKI AKLYKDSLDR KDGCDKKRVV EIECGQEATS EAADQHQIIL 120 HPQHEWEDTE NGKEANSEVA GRQLISHSQH EPEEIDSSIE GSSADEFLSD INDPMNDNMP 180 AALVARDDEQ AMEPGIVDDQ INPWYSFDDR QNIDEWLNAL LNWNSFEQDA LVLDTLDTRF 240 LV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18650.1 | 5e-12 | M-type_MADS family protein |