PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027178743.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 299aa MW: 33384.6 Da PI: 8.3749 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 302.7 | 1.3e-92 | 10 | 299 | 27 | 301 |
GAGA_bind 27 qlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla..salpvgvqvlsgtksidslqqlse.pq 118 m++ aerda+irern+al e+k a+ erdma lqrd+a+aern a+ erd++++al+ ++ s++ +++++ +v +gt+ ++ ++++ + XP_027178743.1 10 TYMAITAERDAAIRERNMALEERKRAFSERDMAMLQRDAAIAERNSAIQERDEAIAALQIRDCSVNnmLSDSAEDGVADGTEDMHYQHMHHAmVN 104 4588999*****************************************************999988655677888999******98888544566 PP GAGA_bind 119 ledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader...............skaekksidlvl 198 + s+ ++ +e+ +++++ +++ +a++++++k+++ +k+ k++++ k + ++ + +++s++ ++k+ +++l XP_027178743.1 105 AAFSPRDILTSETFNSTQVASETAKATKVRQPKEGKMTKSVKSPRSPKRRAEGMIK--PLTPASSN-GwnaghdlkreeelegHLGTWKD-NIGL 195 66777778899999999999999999999999988888877777766555543222..22111111.01234455556677656666765.8*** PP GAGA_bind 199 ngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydl.snpvDLkdhWAkH 292 n++++De+++PvPvCsCtG+++ CYkWGnGGWqSaCCttt+SvyPLP+++++r +R++grKmS++af+klL++L aeG+dl s p+DLkdhWAkH XP_027178743.1 196 NQINFDETSMPVPVCSCTGTPQPCYKWGNGGWQSACCTTTMSVYPLPQVSNKRYTRVGGRKMSGSAFNKLLNRLVAEGHDLySAPLDLKDHWAKH 290 ********************************************************************************8799*********** PP GAGA_bind 293 Gtnkfvtir 301 Gtn++ t++ XP_027178743.1 291 GTNRYSTLK 299 *****9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence |
MDHNHLSIKT YMAITAERDA AIRERNMALE ERKRAFSERD MAMLQRDAAI AERNSAIQER 60 DEAIAALQIR DCSVNNMLSD SAEDGVADGT EDMHYQHMHH AMVNAAFSPR DILTSETFNS 120 TQVASETAKA TKVRQPKEGK MTKSVKSPRS PKRRAEGMIK PLTPASSNGW NAGHDLKREE 180 ELEGHLGTWK DNIGLNQINF DETSMPVPVC SCTGTPQPCY KWGNGGWQSA CCTTTMSVYP 240 LPQVSNKRYT RVGGRKMSGS AFNKLLNRLV AEGHDLYSAP LDLKDHWAKH GTNRYSTLK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.2 | 6e-87 | BBR-BPC family protein |