PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027178624.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 608aa MW: 66465 Da PI: 5.0312 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 457.1 | 1.1e-139 | 236 | 600 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 lv++L++cAea+++++++ a+al++++ la ++ +m+++a+yf+eALa+r+++ + p+++ e++ s++l++ f+e +P+lkf+h XP_027178624.1 236 LVHTLMACAEAIQQDNMKVADALVKHIGILAVSQVGAMRKVATYFAEALARRIYK--------IYPQDSLESSYSDVLQM--HFYESCPYLKFAH 320 689****************************************************........44555555556666555..4************ PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 +taNqaIlea++g++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++A+++gv+fef+ +va++l+dl+ XP_027178624.1 321 FTANQAILEAFSGASRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNSDALQQVGWKLAHLAKTIGVEFEFRGFVANSLADLD 415 *********************************************************************************************** PP GRAS 191 leeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpres.ee 281 ++L+++p Ea+aVn+v++lhrll++++++++ vL+ +ks++Pk+v vveqea+hn++ F++rf eal+yys++fdsl +++l ++s ++ XP_027178624.1 416 ASMLEIRPceVEAVAVNSVFELHRLLSRPGAIDK----VLNSIKSMRPKIVAVVEQEANHNGNVFMDRFNEALHYYSTMFDSLeSSGLTQQSnSQ 506 ********999***************88888877....*********************************************767788777799 PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 + ++++++lgr+i+nvvaceg +r+erhetl +Wr r+++aGF pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+ XP_027178624.1 507 DLVMSEVYLGRQICNVVACEGVDRVERHETLTQWRGRMNSAGFDPVHLGSNAFKQASMLLALFAgGDGYRVEENDGCLMLGWHTRPLIATSAWQ 600 *********************************************************************************************6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 608 aa Download sequence |
MKMKRDRNRD KGEASSSSMV KIHLPTPSPP PPFSTKTKMW EEEQQQAADA GMDELLAVLG 60 YKVKSSDMAE VAQKLEQLER VMGTTMEDGI SCLSDTVHYN PSDLSGWVQS MLSELNNVNL 120 PPSSATSIIS YDEISPAIGG TDGATNDRDL IFDDDLRAIP GDAIFCNSNN NNNSATSKEN 180 AKESSPSCES NKRMKSSPSS TGSDFGGISV SSINPPSSDA ARPVVLVDSQ ETGIRLVHTL 240 MACAEAIQQD NMKVADALVK HIGILAVSQV GAMRKVATYF AEALARRIYK IYPQDSLESS 300 YSDVLQMHFY ESCPYLKFAH FTANQAILEA FSGASRVHVI DFSLKQGMQW PALMQALALR 360 PGGPPAFRLT GIGPPQPDNS DALQQVGWKL AHLAKTIGVE FEFRGFVANS LADLDASMLE 420 IRPCEVEAVA VNSVFELHRL LSRPGAIDKV LNSIKSMRPK IVAVVEQEAN HNGNVFMDRF 480 NEALHYYSTM FDSLESSGLT QQSNSQDLVM SEVYLGRQIC NVVACEGVDR VERHETLTQW 540 RGRMNSAGFD PVHLGSNAFK QASMLLALFA GGDGYRVEEN DGCLMLGWHT RPLIATSAWQ 600 LRDGSESS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 0.0 | GRAS family protein |