PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027178321.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 1425aa MW: 156664 Da PI: 6.3539

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027178321.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.1	9.5e-06	1402	1425	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ f+++G+Ck G++C + H+ XP_027178321.1 1402 GQRVCK-FYESGHCKKGASCDYLHP 1425 6799.8899***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1425 aa Download sequence
MDGGDSSSAL HAPRAETTVS SQSFDQCGLV REMDDSQLVG VPLAVAGDAA VPVKAGEPQQ 60 VPPSAVQLNK TTLGAVGQVM EKRKRGRPPK GHAALAPAPA PPKPPPPKRN KEEEDVCFIC 120 FDGGSLVLCD RKGCPKAYHP ACIKRDEAFF RSKAKWNCGW HICSVCQKAA HYMCYTCTYS 180 LCKGCTKDAE YVCVRGNKGF CTTCMRTIML IENKDLGNSE VVQVDFDDKT SWEYLFKVYW 240 LYLKSNLSLT INELMQAKNP WRGLAMMDYK QQLPARNHFA NGCMVTISDH SVHLESKVPK 300 EQPELLNHDS FLNTEKINSD KVTNLAECKE WASKELLELV AHVRNGDTSM LSQFDVQALL 360 LEYIKRNNLR DPRRKSQIIC DLRLKNLFGK PRVGHIEMLK LLEYHFLIKE DDQNNAFIPA 420 GIVGSVGGNV GVDQKNSLMV NQGKKRKTRR KGEEKTPQTN LDDYAAIDLH NINLIYLRRN 480 LLENLLGDEE KFHDKVVGSV VRIRVSCNDQ KQDIYRLVQV VGTSKASMAY KLGDKMTHVM 540 LEVLNLNKKE TTSIEAISNQ EFSQEECRRL RQSIRCGLVK HWTVGEIQTK AFALQAVKLN 600 DVLEAEILRL NHLRDRANEK GHKKQLRECI EKLQLLKTPE ERQRRLTEIP KVHADPKMNP 660 NYKSEEDIAG ELLKSKISSF NKNESQSISP KSRAKEDGMN RSQQSRQKRD ARGRSGPAKN 720 EMQVPVSGSE SGSGNQQVVR FGSETSSATL PTGSSTPANT SETEKIWHYR DPNGRIQGPF 780 AMVQLRKWST TGYFPADMRI WTINELDESV LLIDALNEFF HKDYRSLHNV SRPQENGPAS 840 DNGTLHSFNP DQTFVAPLHQ ERGYGIEELK SVLDHENQSP HETPTDQATG VQCNEKSSSS 900 QSYVGQSSGQ NCRSVPLNLD LNRKDCNSSL ASVTTPSDSA EQQGDIDILD LPSPTPKTSK 960 SNLEGQDVEK QESGFDGHVQ GSEKSDLPSP SPKPIDDDVP DPTPEPMDED LAGTTYPPKN 1020 EVLPSPSPIP TGGDDREQID KTNQSPLPKV SVPDSGPGWN STSGLRVGGA QLQKIADEWD 1080 GYSPTDPKPS VQEWDTSLAP VASLKPPEVL GDHVTSGSIN NTTQLVHASP CQPASNISSW 1140 QAIVNEPIEF STLAEESVSD LLAEVDAMES QSGLASPTSG MKCSDEMMDS CRNDCFSSIE 1200 ELSPTADAGK SDAVSSNREA QFPPSVTDDP GGTSQADGFD RLKASGGHST SSSEGETKSA 1260 DAPVDPRETG LDVHPPPACT MSQGMVGSTM ARNRGMESMD AGWAGVPGNM NMGWGGSPQG 1320 FPNMGWGSGM VPPWGNPSYN LGGYNGSLPW DSPRRYNGER FAGPRDWGFQ GGDSGFGRGR 1380 PMWSRQSHGG GGGGYSRPPH KGQRVCKFYE SGHCKKGASC DYLHP

Sequence ? help Back to Top

Protein Sequence Length: 1425 aa Download sequence

MDGGDSSSAL HAPRAETTVS SQSFDQCGLV REMDDSQLVG VPLAVAGDAA VPVKAGEPQQ  60
VPPSAVQLNK TTLGAVGQVM EKRKRGRPPK GHAALAPAPA PPKPPPPKRN KEEEDVCFIC  120
FDGGSLVLCD RKGCPKAYHP ACIKRDEAFF RSKAKWNCGW HICSVCQKAA HYMCYTCTYS  180
LCKGCTKDAE YVCVRGNKGF CTTCMRTIML IENKDLGNSE VVQVDFDDKT SWEYLFKVYW  240
LYLKSNLSLT INELMQAKNP WRGLAMMDYK QQLPARNHFA NGCMVTISDH SVHLESKVPK  300
EQPELLNHDS FLNTEKINSD KVTNLAECKE WASKELLELV AHVRNGDTSM LSQFDVQALL  360
LEYIKRNNLR DPRRKSQIIC DLRLKNLFGK PRVGHIEMLK LLEYHFLIKE DDQNNAFIPA  420
GIVGSVGGNV GVDQKNSLMV NQGKKRKTRR KGEEKTPQTN LDDYAAIDLH NINLIYLRRN  480
LLENLLGDEE KFHDKVVGSV VRIRVSCNDQ KQDIYRLVQV VGTSKASMAY KLGDKMTHVM  540
LEVLNLNKKE TTSIEAISNQ EFSQEECRRL RQSIRCGLVK HWTVGEIQTK AFALQAVKLN  600
DVLEAEILRL NHLRDRANEK GHKKQLRECI EKLQLLKTPE ERQRRLTEIP KVHADPKMNP  660
NYKSEEDIAG ELLKSKISSF NKNESQSISP KSRAKEDGMN RSQQSRQKRD ARGRSGPAKN  720
EMQVPVSGSE SGSGNQQVVR FGSETSSATL PTGSSTPANT SETEKIWHYR DPNGRIQGPF  780
AMVQLRKWST TGYFPADMRI WTINELDESV LLIDALNEFF HKDYRSLHNV SRPQENGPAS  840
DNGTLHSFNP DQTFVAPLHQ ERGYGIEELK SVLDHENQSP HETPTDQATG VQCNEKSSSS  900
QSYVGQSSGQ NCRSVPLNLD LNRKDCNSSL ASVTTPSDSA EQQGDIDILD LPSPTPKTSK  960
SNLEGQDVEK QESGFDGHVQ GSEKSDLPSP SPKPIDDDVP DPTPEPMDED LAGTTYPPKN  1020
EVLPSPSPIP TGGDDREQID KTNQSPLPKV SVPDSGPGWN STSGLRVGGA QLQKIADEWD  1080
GYSPTDPKPS VQEWDTSLAP VASLKPPEVL GDHVTSGSIN NTTQLVHASP CQPASNISSW  1140
QAIVNEPIEF STLAEESVSD LLAEVDAMES QSGLASPTSG MKCSDEMMDS CRNDCFSSIE  1200
ELSPTADAGK SDAVSSNREA QFPPSVTDDP GGTSQADGFD RLKASGGHST SSSEGETKSA  1260
DAPVDPRETG LDVHPPPACT MSQGMVGSTM ARNRGMESMD AGWAGVPGNM NMGWGGSPQG  1320
FPNMGWGSGM VPPWGNPSYN LGGYNGSLPW DSPRRYNGER FAGPRDWGFQ GGDSGFGRGR  1380
PMWSRQSHGG GGGGYSRPPH KGQRVCKFYE SGHCKKGASC DYLHP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	0.0	C3H family protein