PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027178196.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

GeBP

Protein Properties

Length: 499aa MW: 56603.7 Da PI: 4.7808

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027178196.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	72.5	7.9e-23	184	275	7	97
DUF573 7 wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskkiWg 97 ws++D lL+ +i+fk+++g +ps +++af+++vk++ ++s+sq+ eKirrLK K + v+k k g+ ++ ++++ +if+lsk+iWg XP_027178196.1 184 WSDDDVKCLLRSIIKFKTEKGLNPSTNMNAFCKYVKGKFGREFSRSQIYEKIRRLKSKGFNSVEKfEKGGDCFVHFNANELEIFKLSKSIWG 275 ********************************************************8888888355666667779999*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence
MESKKPTTHY PPPSTQSEEE ESEKGQDEES REGEEGEEED SKSEHKEESE EEERSEGEEF 60 EVEENIHESP TQLDQMFSAQ KEIITPSQSS SDSGEEEDKE GGDDEELEIS THSSTSDFMI 120 KLIPPTKFTS KGSSSTSKRP LEDQGDEQKH LRSEKKAKGK ADEPNKQEPS AISAAIGEGA 180 GTKWSDDDVK CLLRSIIKFK TEKGLNPSTN MNAFCKYVKG KFGREFSRSQ IYEKIRRLKS 240 KGFNSVEKFE KGGDCFVHFN ANELEIFKLS KSIWGGETGD GTAIDRANET VKSMGKVVSF 300 VKQDKKEEKK KKKNVVKTFF RDDAEDDFQS KYPYLTKSFD VDSWTIMINA DKIAGQRSFL 360 KENMSLIGHG KAMELEDKWK KLREAEVELL LKRSELMKEH CTLVLEDDFS DKKDIENFQN 420 LLAINAVLYL GQRCFVEEKH KRDGPLHGIL KKLSKPSSAH DGVPDTAEFV DGEDVYENSA 480 YNILGATFGY LQRLRENYG

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence

MESKKPTTHY PPPSTQSEEE ESEKGQDEES REGEEGEEED SKSEHKEESE EEERSEGEEF  60
EVEENIHESP TQLDQMFSAQ KEIITPSQSS SDSGEEEDKE GGDDEELEIS THSSTSDFMI  120
KLIPPTKFTS KGSSSTSKRP LEDQGDEQKH LRSEKKAKGK ADEPNKQEPS AISAAIGEGA  180
GTKWSDDDVK CLLRSIIKFK TEKGLNPSTN MNAFCKYVKG KFGREFSRSQ IYEKIRRLKS  240
KGFNSVEKFE KGGDCFVHFN ANELEIFKLS KSIWGGETGD GTAIDRANET VKSMGKVVSF  300
VKQDKKEEKK KKKNVVKTFF RDDAEDDFQS KYPYLTKSFD VDSWTIMINA DKIAGQRSFL  360
KENMSLIGHG KAMELEDKWK KLREAEVELL LKRSELMKEH CTLVLEDDFS DKKDIENFQN  420
LLAINAVLYL GQRCFVEEKH KRDGPLHGIL KKLSKPSSAH DGVPDTAEFV DGEDVYENSA  480
YNILGATFGY LQRLRENYG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	4e-12	GeBP family protein