PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027178137.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 353aa MW: 40465.8 Da PI: 7.4391

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027178137.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.3	4.8e-12	37	114	15	98
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + +p f++++g + +k + l+ ++g sW v l +++ +++l kGWk+F++ +++ fvvF++d++s f +v +f+ XP_027178137.1 37 GIKIPTAFMRKYGDS--LEKVVWLKVPNGASWPVDL--LQTDAGTWLDKGWKDFAEYYSIEQCYFVVFRYDEKSLF--NVIIFD 114 379*******977..6779***********..999999************************986777..776665 PP
2	B3	53.7	3.7e-17	257	352	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+ + ps+v++++ l l +fa eh +++++ l l+ ++g ++W v + + +t GW++Fv +n+L +gD++vF+l++ ++++ XP_027178137.1 257 FIRFMQPSYVTSRCALNLRLSFALEHlTKDNHC--NLDLRVSEGtKTWPVLCF--LYTTNAKITHGWEKFVLDNNLVVGDVCVFELIR-GSRTFI 346 677899******************7545456..5777776666***4..33344569**********************8.555569 PP EEEE-S CS B3 94 vkvfrk 99 ++++r+ XP_027178137.1 347 ITIYRR 352 999987 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
METNQRCNKR SYHQTLNHQA KKSPHFFKVV FSPVDQGIKI PTAFMRKYGD SLEKVVWLKV 60 PNGASWPVDL LQTDAGTWLD KGWKDFAEYY SIEQCYFVVF RYDEKSLFNV IIFDLTASEI 120 EYPLEATQDS GVILGNEDRL PRRRTTSPMR NSDEMEKASD DDSIEILEEI PAAACHAKQG 180 GRSAQIGEEK ASACINKENV EKLDANVNPS QRVTTKESFK TTLSTQSSNP KIKTVIDKDK 240 FSSYQRAEAF TSENPFFIRF MQPSYVTSRC ALNLRLSFAL EHLTKDNHCN LDLRVSEGTK 300 TWPVLCFLYT TNAKITHGWE KFVLDNNLVV GDVCVFELIR GSRTFIITIY RRN

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

METNQRCNKR SYHQTLNHQA KKSPHFFKVV FSPVDQGIKI PTAFMRKYGD SLEKVVWLKV  60
PNGASWPVDL LQTDAGTWLD KGWKDFAEYY SIEQCYFVVF RYDEKSLFNV IIFDLTASEI  120
EYPLEATQDS GVILGNEDRL PRRRTTSPMR NSDEMEKASD DDSIEILEEI PAAACHAKQG  180
GRSAQIGEEK ASACINKENV EKLDANVNPS QRVTTKESFK TTLSTQSSNP KIKTVIDKDK  240
FSSYQRAEAF TSENPFFIRF MQPSYVTSRC ALNLRLSFAL EHLTKDNHCN LDLRVSEGTK  300
TWPVLCFLYT TNAKITHGWE KFVLDNNLVV GDVCVFELIR GSRTFIITIY RRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	5e-43	B3 family protein