PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027177979.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 559aa MW: 60505.5 Da PI: 6.5142 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.1 | 3.7e-09 | 371 | 418 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_027177979.1 371 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 418 8*************************9....677*****************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 559 aa Download sequence |
MDKEYFLNAA GTQLPLQFEA WNSFSPAPEL NCSSGEASNC CLNPNWDKPA DHYARHGSAL 60 SSMVSSAMAP NSSVPVEALA FRELIKKLGP VCSSGDLPQP FPPGAASYAS CNTSCYSTMP 120 LTSPPKLQVP VLNENFSNLR NSVAPNPPLP ALSADPGFAE RAAKFSCFGS RSFNGRTSQF 180 GVHNNAELPY GSSTPTVANG KLPRASSSPL LKRGGSPPLE NNNLGQSQME TRPIDGLIPS 240 SDNTVNKVPL AAANSNEESS VSEQVPSGET GLKTPNESNP RKRKAVARGK AKEDGSSQAA 300 NHNKGAEADI DSNAKRSKMT EATASDDQGV KIEERKGSDN KTGDDKANQR PPEPPKDYIH 360 VRARRGQATD SHSLAERVRR EKISERMKLL QDLVPGCNKV TGKALMLDEI INYVQSLQRQ 420 VEFLSMKLAS VNPRLDNMDN ILSKDLYQPN ASLPPPLFPM DTSEPALYKN PSQQNQELQS 480 NNGSVDQIDT TALCRNLGLQ LPHLDGFTEG LSQFPGFCED DLHSIVRMGY SHNPDTDAAL 540 FHSQTFPVAN QTSRMKIEL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G07340.1 | 3e-88 | bHLH family protein |